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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0532700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase 55 precursor (EC 1.11.1.7) (Atperox P55) (ATP20a).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0207) R2 : 0.00922
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0896 (0.0435) R2dN8 : 0.0119 R2N8 : 0.00922
σ : 0.389
deviance : 69.42
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
65.46 0.38 2.97 -0.0656 0.185 -0.476 -0.216 1.75 0.0917 8.03 50.24 8 -- --
66.57 0.38 2.97 -0.071 0.183 -0.192 -0.3 -- 0.0867 8.16 51.99 7 -- --
65.49 0.377 2.97 -0.0671 0.182 -0.459 -- 1.71 0.0945 8.13 50.02 6 -- --
66.8 0.381 2.97 -0.0801 0.184 -0.21 -- -- 0.0874 8.09 51.04 6 -- --
67.33 0.382 2.97 -0.0652 -- -0.463 -- 1.73 0.0956 -- 50 6 -- --
67.04 0.384 2.97 -0.0695 0.184 -- -0.312 -- 0.079 8.49 -- -- -- --
67.35 0.384 2.97 -0.0792 0.184 -- -- -- 0.0791 8.53 -- -- -- --
68.66 0.386 2.97 -0.0786 -- -0.214 -- -- 0.0898 -- 51.48 6 -- --
66.97 0.381 2.96 -- 0.183 -0.209 -- -- 0.0963 8.12 51.41 6 -- --
69.26 0.389 2.97 -0.0785 -- -- -- -- 0.0809 -- -- -- -- --
67.52 0.384 2.97 -- 0.184 -- -- -- 0.088 8.57 -- -- -- --
68.82 0.386 2.97 -- -- -0.214 -- -- 0.0986 -- 51.79 6 -- --
69.42 0.389 2.97 -- -- -- -- -- 0.0896 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.64 humidity 90.0 90 < th dose dependent rect. 4 1
2 61.66 humidity 90.0 10 < th dose dependent rect. 4 1
4 61.69 humidity 90.0 10 < th dose independent rect. 4 1
6 61.78 atmosphere 1005.0 10 > th dose dependent rect. 4 1
9 61.88 atmosphere 1005.0 10 > th dose independent rect. 4 1
14 61.90 wind 3.0 30 < th dose independent rect. 4 1
17 61.90 wind 7.0 30 < th dose dependent rect. 4 1
20 61.91 temperature 10.0 30 > th dose independent rect. 4 1
22 61.91 temperature 30.0 30 < th dose independent rect. 4 1
23 61.91 humidity 50.0 30 > th dose independent rect. 4 1
27 61.91 atmosphere 995.0 30 > th dose independent rect. 4 1
29 61.91 atmosphere 1010.0 30 < th dose independent rect. 4 1
31 61.91 radiation 1.0 30 < th dose independent rect. 4 1
36 61.91 precipitation 0.1 30 < th dose independent rect. 4 1
37 61.91 temperature 10.0 30 > th dose independent rect. 5 23
39 61.91 temperature 30.0 30 < th dose dependent rect. 4 1
40 61.91 radiation 1.0 30 < th dose dependent rect. 4 1
45 61.91 precipitation 0.1 30 < th dose dependent rect. 4 1
46 61.92 wind 7.0 1440 < th dose independent rect. 5 1
48 61.92 temperature 10.0 1440 > th dose independent rect. 5 1
51 61.92 temperature 30.0 1440 < th dose independent rect. 5 1
55 61.92 humidity 50.0 1440 > th dose independent rect. 5 1
64 61.92 atmosphere 995.0 1440 > th dose independent rect. 5 1
65 61.92 atmosphere 1015.0 1440 < th dose independent rect. 5 1
66 61.92 radiation 20.0 1440 < th dose independent rect. 5 1
75 61.92 temperature 10.0 1440 > th dose independent rect. 6 23
79 61.93 temperature 10.0 30 > th dose dependent rect. 4 1
80 61.93 humidity 50.0 30 > th dose dependent rect. 4 1
82 61.94 wind 1.0 30 > th dose independent rect. 4 1
83 61.94 temperature 25.0 90 > th dose independent rect. 3 1
84 61.94 temperature 25.0 10 > th dose independent rect. 4 1
92 61.94 temperature 25.0 90 > th dose dependent rect. 3 1
93 61.94 temperature 25.0 10 > th dose dependent rect. 4 1
106 61.96 atmosphere 1015.0 30 < th dose dependent rect. 4 1
144 62.06 wind 1.0 30 > th dose dependent rect. 4 1
152 62.15 humidity 50.0 10 > th dose independent rect. 5 23
160 62.26 atmosphere 995.0 30 > th dose independent rect. 5 23
171 62.50 precipitation 0.1 30 < th dose independent rect. 5 23
172 62.50 precipitation 0.1 30 < th dose dependent rect. 5 23
186 62.93 humidity 70.0 4320 > th dose independent rect. 22 7
193 63.12 humidity 70.0 4320 > th dose independent rect. 21 1
201 63.17 wind 9.0 30 < th dose independent rect. 5 23
210 63.26 humidity 50.0 4320 > th dose independent rect. 16 1
215 63.40 wind 9.0 4320 > th dose dependent rect. 14 1
222 63.69 humidity 70.0 4320 < th dose independent rect. 20 11
223 63.73 humidity 70.0 4320 < th dose dependent rect. 20 11
225 63.74 radiation 1.0 720 < th dose independent rect. 8 1
226 63.74 radiation 1.0 720 < th dose dependent rect. 8 1
237 63.93 wind 9.0 4320 > th dose independent rect. 14 1
239 63.96 humidity 70.0 4320 < th dose independent rect. 20 1
249 63.96 humidity 70.0 4320 < th dose dependent rect. 20 1
265 64.25 wind 9.0 4320 < th dose independent rect. 14 1
273 64.38 wind 1.0 30 < th dose independent rect. 10 1
274 64.38 temperature 10.0 1440 > th dose independent rect. 11 1
278 64.38 atmosphere 995.0 1440 > th dose independent rect. 11 1
281 64.38 precipitation 0.1 1440 < th dose independent rect. 11 1
283 64.38 temperature 10.0 1440 > th dose independent rect. 12 23
286 64.38 wind 1.0 30 < th dose dependent rect. 10 1
287 64.38 precipitation 0.1 1440 < th dose dependent rect. 11 1
291 64.43 humidity 50.0 4320 < th dose independent rect. 11 1
294 64.46 humidity 80.0 4320 < th dose dependent rect. 5 1
312 64.49 temperature 25.0 30 > th dose dependent rect. 10 1
313 64.52 radiation 20.0 30 > th dose independent rect. 10 1
314 64.53 humidity 70.0 30 < th dose independent rect. 10 1
315 64.53 atmosphere 1010.0 10 > th dose dependent rect. 12 1
356 64.56 humidity 60.0 14400 < th dose independent rect. 6 1
360 64.56 radiation 20.0 14400 > th dose independent rect. 17 1
412 64.56 humidity 60.0 14400 < th dose dependent rect. 6 1
416 64.56 radiation 20.0 14400 > th dose dependent rect. 17 1
468 64.60 atmosphere 1005.0 30 > th dose independent rect. 10 1
469 64.60 radiation 40.0 30 < th dose independent rect. 10 1
471 64.61 temperature 25.0 30 > th dose independent rect. 10 1
472 64.62 temperature 30.0 30 < th dose independent rect. 5 23
477 64.63 atmosphere 1000.0 30 > th dose dependent rect. 10 1
480 64.64 atmosphere 1010.0 30 < th dose independent rect. 10 1
483 64.64 humidity 50.0 4320 > th dose independent rect. 6 6
484 64.64 humidity 80.0 30 < th dose dependent rect. 10 1
511 64.67 humidity 80.0 4320 < th dose independent rect. 5 1
512 64.67 humidity 50.0 4320 > th dose independent rect. 24 12
540 64.70 humidity 60.0 30 > th dose independent rect. 10 1
541 64.70 humidity 50.0 4320 < th dose independent rect. 16 1
560 64.71 humidity 50.0 4320 > th dose independent rect. 9 3
578 64.72 temperature 30.0 30 < th dose independent rect. 10 1
583 64.72 humidity 50.0 4320 < th dose dependent rect. 11 1
584 64.73 wind 5.0 30 < th dose independent rect. 10 1
587 64.73 humidity 50.0 4320 > th dose independent rect. 19 17
588 64.74 temperature 10.0 30 > th dose independent rect. 10 1
590 64.74 humidity 60.0 14400 > th dose independent rect. 7 1
597 64.74 precipitation 0.1 30 < th dose independent rect. 10 1
599 64.74 temperature 10.0 30 > th dose independent rect. 11 23
600 64.74 atmosphere 1010.0 30 > th dose dependent sin 23 NA
602 64.74 wind 7.0 30 < th dose dependent rect. 10 1
604 64.74 precipitation 0.1 30 < th dose dependent rect. 10 1
605 64.74 humidity 50.0 30 > th dose dependent rect. 5 23
606 64.75 wind 1.0 30 > th dose independent rect. 10 1
754 64.77 radiation 1.0 30 > th dose dependent rect. 10 1
882 64.84 atmosphere 1010.0 30 < th dose independent rect. 5 23
894 64.85 humidity 60.0 14400 > th dose independent rect. 5 3
944 64.93 wind 1.0 30 > th dose dependent rect. 10 1
965 64.94 radiation 40.0 30 < th dose dependent rect. 10 1
987 64.95 humidity 50.0 4320 > th dose dependent rect. 5 4