Os08g0532400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AT.I.24-7 protein.
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Os08g0532400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AT.I.24-7 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.32 | 0.333 | 11.2 | -0.272 | 0.607 | 0.892 | -0.273 | 1.76 | -0.326 | 10.6 | 29.5 | 541 | -- | -- |
| 53.21 | 0.34 | 11.2 | 0.0355 | 0.621 | 0.935 | -0.0767 | -- | -0.282 | 10.8 | 39.95 | 506 | -- | -- |
| 50.53 | 0.331 | 11.2 | -0.265 | 0.628 | 0.9 | -- | 1.67 | -0.312 | 10.8 | 29.67 | 491 | -- | -- |
| 53.23 | 0.34 | 11.2 | 0.0378 | 0.619 | 0.945 | -- | -- | -0.279 | 10.8 | 56.52 | 506 | -- | -- |
| 68.33 | 0.385 | 11.2 | -0.126 | -- | 1.32 | -- | 1.58 | -0.254 | -- | 30.62 | 718 | -- | -- |
| 63.49 | 0.374 | 11.2 | -0.179 | 0.774 | -- | 0.0407 | -- | -0.42 | 9.68 | -- | -- | -- | -- |
| 63.49 | 0.373 | 11.2 | -0.178 | 0.774 | -- | -- | -- | -0.42 | 9.69 | -- | -- | -- | -- |
| 70.52 | 0.391 | 11.2 | 0.157 | -- | 1.35 | -- | -- | -0.213 | -- | 65.27 | 733 | -- | -- |
| 53.27 | 0.34 | 11.2 | -- | 0.622 | 0.927 | -- | -- | -0.285 | 10.8 | 61.02 | 505 | -- | -- |
| 99.08 | 0.465 | 11.2 | -0.185 | -- | -- | -- | -- | -0.419 | -- | -- | -- | -- | -- |
| 64.33 | 0.375 | 11.2 | -- | 0.775 | -- | -- | -- | -0.4 | 9.7 | -- | -- | -- | -- |
| 71.1 | 0.393 | 11.2 | -- | -- | 1.29 | -- | -- | -0.238 | -- | 80.48 | 730 | -- | -- |
| 99.98 | 0.467 | 11.2 | -- | -- | -- | -- | -- | -0.398 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.05 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 17 |
| 17 | 49.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 20 |
| 23 | 49.42 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 17 |
| 24 | 49.46 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 47 | 49.77 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 72 | 50.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 13 |
| 79 | 50.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 122 | 50.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 18 |
| 126 | 50.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 16 |
| 140 | 50.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 20 |
| 151 | 50.61 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 6 |
| 207 | 50.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 20 |
| 208 | 50.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 22 |
| 218 | 50.87 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 19 |
| 224 | 50.89 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 235 | 50.92 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 247 | 50.95 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 253 | 50.96 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 272 | 51.00 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 288 | 51.03 | radiation | 10 | 90 | < th | dose dependent | rect. | 1 | 15 |
| 306 | 51.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 4 |
| 316 | 51.08 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 332 | 51.10 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 19 |
| 342 | 51.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 347 | 51.13 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 411 | 51.21 | temperature | 25 | 1440 | < th | dose independent | sin | 16 | NA |
| 426 | 51.23 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 447 | 51.25 | temperature | 10 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 466 | 51.27 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 472 | 51.29 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 482 | 51.30 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 484 | 51.30 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 498 | 51.32 | temperature | 25 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 502 | 51.33 | temperature | 25 | 1440 | > th | dose independent | sin | 16 | NA |
| 547 | 51.38 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 548 | 51.38 | temperature | 25 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 550 | 51.38 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 567 | 51.40 | wind | 7 | 270 | < th | dose independent | rect. | 24 | 17 |
| 590 | 51.43 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 596 | 51.43 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 613 | 51.45 | temperature | 25 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 618 | 51.46 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 18 |
| 646 | 51.48 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 708 | 51.53 | radiation | 10 | 90 | < th | dose dependent | rect. | 1 | 9 |
| 718 | 51.54 | temperature | 25 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 830 | 51.63 | wind | 5 | 270 | < th | dose independent | rect. | 23 | 6 |
| 833 | 51.63 | wind | 9 | 270 | < th | dose dependent | rect. | 23 | 6 |
| 882 | 51.68 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 913 | 51.71 | radiation | 10 | 90 | < th | dose dependent | sin | 5 | NA |
| 916 | 51.71 | radiation | 10 | 10 | < th | dose dependent | rect. | 1 | 16 |
| 933 | 51.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 6 |
| 934 | 51.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 15 |