Os08g0531000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Diphosphonucleotide phosphatase 1 precursor.
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Os08g0531000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Diphosphonucleotide phosphatase 1 precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 496.73 | 1.05 | 10.2 | -2.87 | 2.95 | -1.93 | 1.8 | -2.57 | -0.569 | 12.2 | 20.6 | 1309 | -- | -- |
| 509.93 | 1.05 | 10.1 | -2.39 | 2.94 | -1.61 | 2.05 | -- | -0.471 | 12.2 | 20.6 | 1280 | -- | -- |
| 509.18 | 1.05 | 10.2 | -2.89 | 2.91 | -1.87 | -- | -2.86 | -0.597 | 12.3 | 20.7 | 1227 | -- | -- |
| 526.99 | 1.07 | 10.1 | -2.27 | 3.02 | -1.67 | -- | -- | -0.454 | 12.3 | 20.58 | 1531 | -- | -- |
| 991.66 | 1.47 | 10.3 | -2.84 | -- | -2.37 | -- | -2.64 | -0.588 | -- | 20.9 | 908 | -- | -- |
| 571.75 | 1.12 | 10.2 | -3.05 | 3.04 | -- | 1.94 | -- | -0.844 | 12.2 | -- | -- | -- | -- |
| 587.64 | 1.14 | 10.2 | -2.97 | 3.04 | -- | -- | -- | -0.833 | 12.3 | -- | -- | -- | -- |
| 1021.42 | 1.49 | 10.2 | -2.18 | -- | -2.15 | -- | -- | -0.367 | -- | 20.8 | 883 | -- | -- |
| 587.05 | 1.13 | 9.98 | -- | 2.99 | -2.33 | -- | -- | 0.167 | 12.3 | 20 | 47520 | -- | -- |
| 1167.68 | 1.6 | 10.3 | -3.07 | -- | -- | -- | -- | -0.881 | -- | -- | -- | -- | -- |
| 820.11 | 1.34 | 10.1 | -- | 3.08 | -- | -- | -- | -0.502 | 12.4 | -- | -- | -- | -- |
| 1128.87 | 1.56 | 10.1 | -- | -- | -3.07 | -- | -- | -0.0177 | -- | 20.29 | 937 | -- | -- |
| 1416.56 | 1.76 | 10.2 | -- | -- | -- | -- | -- | -0.54 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 484.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 2 | 484.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 8 | 488.62 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 12 | 489.95 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 14 | 490.11 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 24 | 492.52 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 27 | 492.77 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 17 |
| 30 | 493.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 9 |
| 39 | 493.86 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 43 | 494.14 | humidity | 70 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 48 | 494.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 9 |
| 127 | 497.33 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 20 |
| 145 | 498.06 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 194 | 499.07 | humidity | 70 | 720 | > th | dose dependent | sin | 15 | NA |
| 215 | 499.50 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 229 | 499.91 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 301 | 500.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 13 |
| 312 | 501.15 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 5 |
| 395 | 502.26 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 16 |
| 417 | 502.46 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 447 | 502.71 | wind | 1 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 509 | 503.24 | humidity | 80 | 720 | > th | dose independent | sin | 16 | NA |
| 545 | 503.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 588 | 503.98 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 9 |
| 594 | 504.03 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 639 | 504.39 | wind | 9 | 270 | < th | dose independent | sin | 10 | NA |
| 665 | 504.65 | wind | 7 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 681 | 504.78 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 728 | 505.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 734 | 505.19 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 765 | 505.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 825 | 505.92 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 830 | 505.95 | temperature | 20 | 4320 | < th | dose independent | sin | 18 | NA |
| 848 | 506.08 | temperature | 20 | 4320 | > th | dose independent | sin | 18 | NA |
| 853 | 506.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 864 | 506.21 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 877 | 506.32 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 944 | 506.74 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 954 | 506.78 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |