Os08g0530800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os08g0530800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 235.54 | 0.721 | 6.06 | -0.385 | 2.25 | -2.37 | 0.767 | -1.45 | -0.481 | 11 | 21.2 | 1363 | -- | -- |
| 239.91 | 0.721 | 6.02 | -0.0688 | 2.25 | -2.2 | 0.827 | -- | -0.409 | 10.9 | 21.4 | 1361 | -- | -- |
| 237.98 | 0.718 | 6.06 | -0.364 | 2.25 | -2.36 | -- | -1.5 | -0.48 | 11 | 21.2 | 1363 | -- | -- |
| 242.8 | 0.726 | 6.01 | -0.036 | 2.25 | -2.2 | -- | -- | -0.401 | 11 | 21.4 | 1369 | -- | -- |
| 478.96 | 1.02 | 6.08 | -0.44 | -- | -2.43 | -- | -1.16 | -0.351 | -- | 21.9 | 887 | -- | -- |
| 377.65 | 0.911 | 6.15 | -0.968 | 2.33 | -- | 0.644 | -- | -1.01 | 11.1 | -- | -- | -- | -- |
| 379.38 | 0.912 | 6.15 | -0.941 | 2.33 | -- | -- | -- | -1.01 | 11.1 | -- | -- | -- | -- |
| 486.24 | 1.03 | 6.04 | -0.112 | -- | -2.4 | -- | -- | -0.283 | -- | 21.88 | 896 | -- | -- |
| 242.82 | 0.726 | 6.01 | -- | 2.25 | -2.21 | -- | -- | -0.395 | 11 | 21.38 | 1369 | -- | -- |
| 717.12 | 1.25 | 6.21 | -0.996 | -- | -- | -- | -- | -1.03 | -- | -- | -- | -- | -- |
| 402.73 | 0.939 | 6.13 | -- | 2.34 | -- | -- | -- | -0.906 | 11.2 | -- | -- | -- | -- |
| 486.55 | 1.03 | 6.04 | -- | -- | -2.43 | -- | -- | -0.267 | -- | 21.8 | 896 | -- | -- |
| 743.31 | 1.27 | 6.18 | -- | -- | -- | -- | -- | -0.92 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 231.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 2 | 232.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 3 | 234.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 4 |
| 4 | 235.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 4 |
| 14 | 237.29 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 36 | 239.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 64 | 241.56 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 82 | 242.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 84 | 242.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 96 | 243.13 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 139 | 243.85 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 141 | 243.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 217 | 244.89 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 219 | 244.90 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 226 | 245.01 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 17 |
| 237 | 245.22 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 14 |
| 240 | 245.24 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 613 | 248.92 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 675 | 249.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 680 | 249.61 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 724 | 249.99 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 744 | 250.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 835 | 250.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 850 | 251.06 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |