Os08g0530400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Moco containing protein (Moco containing protein(OsMCP)).
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Os08g0530400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Moco containing protein (Moco containing protein(OsMCP)).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.13 | 0.282 | 12.7 | -1.05 | 1.89 | 0.7 | 0.7 | 1.62 | -0.485 | 8.15 | 19.1 | 717 | -- | -- |
| 38.06 | 0.287 | 12.7 | -1.41 | 1.89 | 0.811 | 0.311 | -- | -0.587 | 8.16 | 17.79 | 715 | -- | -- |
| 37.4 | 0.285 | 12.7 | -1.11 | 1.9 | 0.735 | -- | 1.29 | -0.503 | 8.16 | 19.1 | 737 | -- | -- |
| 38.25 | 0.288 | 12.7 | -1.39 | 1.9 | 0.774 | -- | -- | -0.58 | 8.15 | 18.99 | 722 | -- | -- |
| 193.13 | 0.647 | 12.7 | -0.982 | -- | 0.597 | -- | 1.63 | -0.435 | -- | 14.55 | 2915 | -- | -- |
| 49.19 | 0.329 | 12.7 | -1.18 | 1.67 | -- | 0.161 | -- | -0.442 | 8.13 | -- | -- | -- | -- |
| 49.27 | 0.329 | 12.7 | -1.17 | 1.67 | -- | -- | -- | -0.442 | 8.13 | -- | -- | -- | -- |
| 193.47 | 0.651 | 12.7 | -1.3 | -- | 0.771 | -- | -- | -0.525 | -- | 14.55 | 2915 | -- | -- |
| 83.54 | 0.428 | 12.7 | -- | 1.67 | 0.365 | -- | -- | -0.365 | 7.88 | 18.99 | 722 | -- | -- |
| 202.13 | 0.664 | 12.7 | -1.16 | -- | -- | -- | -- | -0.422 | -- | -- | -- | -- | -- |
| 85.64 | 0.433 | 12.7 | -- | 1.66 | -- | -- | -- | -0.311 | 8.18 | -- | -- | -- | -- |
| 220.64 | 0.692 | 12.7 | -- | -- | -0.663 | -- | -- | -0.0944 | -- | 7.329 | 47520 | -- | -- |
| 237.66 | 0.72 | 12.7 | -- | -- | -- | -- | -- | -0.293 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.41 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 16 |
| 5 | 34.53 | temperature | 20 | 10 | > th | dose dependent | sin | 8 | NA |
| 15 | 35.18 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 26 | 35.46 | temperature | 30 | 10 | < th | dose dependent | sin | 7 | NA |
| 60 | 35.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 97 | 36.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 115 | 36.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 132 | 36.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 133 | 36.31 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 136 | 36.33 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 144 | 36.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 145 | 36.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 155 | 36.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 157 | 36.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 162 | 36.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 18 |
| 167 | 36.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 21 |
| 180 | 36.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 190 | 36.50 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 193 | 36.50 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 200 | 36.51 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 293 | 36.70 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 8 |
| 305 | 36.72 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 335 | 36.79 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 7 |
| 347 | 36.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 366 | 36.85 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 368 | 36.85 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 395 | 36.90 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 408 | 36.92 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 421 | 36.93 | temperature | 25 | 720 | < th | dose dependent | sin | 15 | NA |
| 423 | 36.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 428 | 36.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 436 | 36.95 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 485 | 37.04 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 489 | 37.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 507 | 37.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 575 | 37.16 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 609 | 37.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 23 |
| 681 | 37.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 11 |
| 810 | 37.43 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 827 | 37.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 888 | 37.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 934 | 37.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 954 | 37.55 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 972 | 37.57 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 987 | 37.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 993 | 37.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 8 |