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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0529200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : CBS domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.29 (0.0272) R2 : 0.00206
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0557 (0.0573) R2dN8 : 0.00266 R2N8 : 0.00206
σ : 0.513
deviance : 120.79
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.53 0.492 2.44 -1.62 0.261 96.6 0.814 204 -0.032 8.12 15 90 -- --
114.81 0.503 3.28 0.0796 0.279 0.188 0.686 -- -0.0485 7.95 14.56 50 -- --
113.12 0.495 2.44 -1.6 0.281 96.7 -- 204 -0.0343 6.96 15.01 89 -- --
116.03 0.505 3.29 0.0988 0.288 0.121 -- -- -0.0497 7.28 14.56 50 -- --
117.26 0.504 2.46 -1.58 -- 96.8 -- 204 -0.0293 -- 15.04 86 -- --
114.87 0.502 3.28 0.0872 0.281 -- 0.669 -- -0.0467 7.93 -- -- -- --
116.06 0.504 3.29 0.103 0.288 -- -- -- -0.0485 7.31 -- -- -- --
120.42 0.513 3.29 0.102 -- 0.173 -- -- -0.0453 -- 14.56 50 -- --
116.28 0.505 3.29 -- 0.288 0.172 -- -- -0.061 7.25 14.69 53 -- --
120.48 0.513 3.29 0.108 -- -- -- -- -0.0436 -- -- -- -- --
116.34 0.505 3.29 -- 0.289 -- -- -- -0.06 7.28 -- -- -- --
120.69 0.513 3.29 -- -- 0.224 -- -- -0.0569 -- 14.69 70 -- --
120.79 0.513 3.29 -- -- -- -- -- -0.0557 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 104.26 humidity 90.0 10 > th dose dependent rect. 7 1
5 104.55 humidity 90.0 10 > th dose independent rect. 7 1
39 106.23 temperature 15.0 720 > th dose dependent rect. 4 3
54 106.73 radiation 10.0 30 < th dose independent rect. 6 2
74 107.43 radiation 10.0 90 < th dose dependent rect. 6 1
80 107.56 temperature 30.0 720 < th dose dependent rect. 1 2
96 107.86 wind 3.0 10 > th dose independent rect. 8 1
97 107.89 temperature 30.0 270 < th dose dependent rect. 23 13
109 108.03 precipitation 0.1 720 < th dose independent rect. 21 10
110 108.03 precipitation 0.1 720 < th dose dependent rect. 21 10
111 108.03 temperature 30.0 10 < th dose dependent rect. 24 13
119 108.13 humidity 90.0 10 > th dose independent rect. 7 5
126 108.17 temperature 20.0 270 > th dose independent rect. 3 6
137 108.31 precipitation 0.1 720 < th dose independent rect. 19 14
138 108.31 precipitation 0.1 720 < th dose dependent rect. 19 14
141 108.35 temperature 10.0 720 > th dose dependent rect. 21 11
146 108.38 wind 3.0 30 < th dose independent rect. 7 1
147 108.38 radiation 10.0 90 < th dose independent rect. 6 11
217 108.80 atmosphere 1015.0 1440 < th dose independent rect. 1 8
219 108.81 radiation 1.0 30 > th dose independent rect. 7 1
220 108.82 radiation 10.0 270 < th dose independent rect. 4 4
223 108.84 atmosphere 1000.0 270 > th dose independent rect. 23 13
225 108.85 humidity 50.0 14400 > th dose independent rect. 8 1
236 108.90 humidity 50.0 270 > th dose independent rect. 23 13
263 109.00 wind 5.0 10 < th dose dependent rect. 7 1
266 109.01 temperature 20.0 10 < th dose dependent rect. 1 11
268 109.02 atmosphere 1015.0 720 < th dose independent rect. 21 10
279 109.07 temperature 10.0 270 > th dose independent rect. 12 11
280 109.07 temperature 10.0 270 > th dose independent rect. 23 13
285 109.08 precipitation 0.1 720 < th dose independent rect. 9 10
287 109.08 precipitation 0.1 720 < th dose dependent rect. 9 10
294 109.10 radiation 1.0 720 < th dose dependent rect. 23 12
346 109.25 temperature 15.0 720 > th dose dependent sin 8 NA
348 109.25 radiation 20.0 270 < th dose dependent rect. 4 4
352 109.26 temperature 15.0 720 > th dose independent rect. 4 12
362 109.29 radiation 40.0 720 < th dose independent rect. 19 14
365 109.30 wind 1.0 90 > th dose independent rect. 6 1
374 109.31 atmosphere 995.0 270 > th dose independent rect. 12 11
380 109.32 temperature 30.0 270 < th dose independent rect. 23 13
388 109.32 temperature 30.0 30 < th dose dependent rect. 24 19
407 109.36 temperature 10.0 720 > th dose independent rect. 9 10
408 109.36 atmosphere 1015.0 720 < th dose independent rect. 9 10
409 109.36 temperature 10.0 720 > th dose independent rect. 19 14
410 109.36 humidity 50.0 720 > th dose independent rect. 19 14
411 109.36 atmosphere 995.0 720 > th dose independent rect. 19 14
415 109.37 atmosphere 1015.0 720 < th dose independent rect. 19 13
425 109.39 wind 1.0 270 > th dose independent rect. 12 11
433 109.40 temperature 30.0 720 < th dose independent rect. 19 14
441 109.42 radiation 1.0 90 > th dose independent rect. 4 5
453 109.43 radiation 30.0 720 < th dose independent rect. 21 10
457 109.44 temperature 10.0 720 > th dose independent rect. 21 10
458 109.44 temperature 30.0 720 < th dose independent rect. 21 10
459 109.44 humidity 50.0 720 > th dose independent rect. 21 10
461 109.44 atmosphere 995.0 720 > th dose independent rect. 21 10
464 109.44 temperature 10.0 720 > th dose independent rect. 7 14
468 109.46 wind 9.0 720 < th dose independent rect. 19 14
493 109.52 wind 9.0 720 < th dose independent rect. 21 10
497 109.53 precipitation 0.1 720 > th dose independent rect. 20 7
498 109.53 radiation 1.0 90 > th dose independent rect. 13 20
502 109.53 precipitation 0.1 720 > th dose dependent rect. 20 7
518 109.55 temperature 10.0 30 > th dose dependent rect. 8 23
526 109.58 wind 1.0 90 > th dose independent rect. 5 4
546 109.62 temperature 30.0 10 < th dose dependent sin 3 NA
554 109.64 wind 9.0 270 < th dose independent rect. 12 11
573 109.68 precipitation 0.1 720 > th dose independent rect. 1 2
574 109.68 precipitation 0.1 270 < th dose independent rect. 12 11
575 109.68 wind 9.0 270 < th dose independent rect. 23 13
577 109.68 precipitation 0.1 720 > th dose dependent rect. 1 2
581 109.68 precipitation 0.1 270 < th dose dependent rect. 12 11
593 109.70 precipitation 0.1 720 > th dose independent rect. 22 5
597 109.70 precipitation 0.1 720 > th dose dependent rect. 22 5
619 109.73 precipitation 0.1 270 < th dose independent rect. 23 13
622 109.73 precipitation 0.1 270 < th dose dependent rect. 23 13
659 109.79 precipitation 0.1 270 > th dose independent rect. 9 5
693 109.83 atmosphere 1000.0 720 > th dose independent rect. 24 3
706 109.84 precipitation 0.1 270 > th dose dependent rect. 9 5
712 109.85 atmosphere 1015.0 270 < th dose independent rect. 23 13
713 109.85 precipitation 0.1 720 < th dose independent rect. 3 21
717 109.85 precipitation 0.1 720 < th dose dependent rect. 3 21
727 109.87 atmosphere 1005.0 30 > th dose independent rect. 7 1
743 109.88 radiation 40.0 720 < th dose dependent rect. 21 10
762 109.91 atmosphere 995.0 720 > th dose independent rect. 9 10
771 109.92 temperature 10.0 270 > th dose dependent rect. 3 12
793 109.95 atmosphere 1015.0 720 < th dose independent rect. 1 15
797 109.95 radiation 10.0 90 < th dose dependent rect. 6 11
805 109.96 atmosphere 995.0 720 > th dose independent rect. 7 14
806 109.96 temperature 15.0 10 > th dose dependent sin 3 NA
813 109.97 temperature 30.0 720 < th dose independent rect. 15 21
860 110.02 atmosphere 1000.0 720 > th dose independent rect. 23 5
861 110.02 temperature 20.0 30 < th dose independent rect. 1 12
869 110.03 temperature 20.0 10 < th dose dependent sin 3 NA
886 110.05 radiation 1.0 90 > th dose independent sin 11 NA
901 110.06 temperature 30.0 90 > th dose dependent rect. 12 1
936 110.09 temperature 15.0 30 > th dose dependent rect. 6 18
972 110.12 temperature 30.0 270 < th dose dependent rect. 22 21