Os08g0529100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Proteasome subunit beta type 1 (EC 3.4.25.1) (20S proteasome alpha subunit F) (20S proteasome subunit beta-6).
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Os08g0529100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Proteasome subunit beta type 1 (EC 3.4.25.1) (20S proteasome alpha subunit F) (20S proteasome subunit beta-6).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.48 | 0.48 | 8.87 | -0.172 | 0.413 | 2.4 | -0.55 | 2.94 | -0.114 | 19.5 | 19.3 | 3723 | -- | -- |
| 112.93 | 0.495 | 8.77 | 0.143 | 0.418 | 1.64 | -0.611 | -- | -0.0192 | 19.3 | 19.78 | 3694 | -- | -- |
| 104.33 | 0.476 | 8.88 | -0.158 | 0.412 | 2.68 | -- | 3.55 | -0.133 | 19.2 | 18.97 | 3685 | -- | -- |
| 113.12 | 0.495 | 8.77 | 0.164 | 0.422 | 1.63 | -- | -- | -0.0159 | 19.1 | 19.89 | 3617 | -- | -- |
| 112.26 | 0.493 | 8.88 | -0.0528 | -- | 2.77 | -- | 3.75 | -0.0896 | -- | 19 | 4205 | -- | -- |
| 157.49 | 0.588 | 8.86 | -0.779 | 0.405 | -- | -0.567 | -- | -0.428 | 18.9 | -- | -- | -- | -- |
| 158.21 | 0.589 | 8.86 | -0.768 | 0.407 | -- | -- | -- | -0.429 | 18.5 | -- | -- | -- | -- |
| 120.97 | 0.512 | 8.75 | 0.222 | -- | 1.64 | -- | -- | -0.003 | -- | 19.87 | 4217 | -- | -- |
| 113.58 | 0.496 | 8.77 | -- | 0.421 | 1.53 | -- | -- | -0.0531 | 19 | 19.89 | 3600 | -- | -- |
| 166.83 | 0.604 | 8.85 | -0.778 | -- | -- | -- | -- | -0.437 | -- | -- | -- | -- | -- |
| 173.74 | 0.617 | 8.84 | -- | 0.417 | -- | -- | -- | -0.343 | 18.4 | -- | -- | -- | -- |
| 120.46 | 0.511 | 8.76 | -- | -- | 1.45 | -- | -- | -0.0423 | -- | 20.59 | 2849 | -- | -- |
| 182.79 | 0.631 | 8.83 | -- | -- | -- | -- | -- | -0.351 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.06 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 5 | 98.00 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 12 |
| 7 | 98.59 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 9 | 98.68 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 4 |
| 12 | 98.74 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 16 |
| 38 | 99.61 | wind | 1 | 14400 | < th | dose dependent | rect. | 3 | 9 |
| 39 | 99.63 | wind | 3 | 14400 | < th | dose dependent | sin | 8 | NA |
| 42 | 99.69 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 12 |
| 59 | 99.95 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 66 | 100.15 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 16 |
| 83 | 100.26 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 16 |
| 86 | 100.29 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 105 | 100.48 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 112 | 100.51 | wind | 1 | 14400 | > th | dose independent | sin | 8 | NA |
| 126 | 100.59 | wind | 1 | 14400 | < th | dose independent | sin | 8 | NA |
| 137 | 100.65 | wind | 3 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 148 | 100.69 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 199 | 101.05 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 205 | 101.11 | wind | 1 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 324 | 101.96 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 11 |
| 332 | 102.01 | wind | 1 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 337 | 102.03 | wind | 1 | 14400 | < th | dose independent | rect. | 3 | 9 |
| 341 | 102.06 | wind | 1 | 14400 | > th | dose independent | rect. | 3 | 9 |
| 527 | 103.03 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 540 | 103.09 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 19 |
| 583 | 103.30 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 4 |
| 588 | 103.31 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 17 |
| 635 | 103.49 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 20 |
| 675 | 103.64 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 22 |
| 748 | 103.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 14 |
| 785 | 104.08 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 20 |
| 802 | 104.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 892 | 104.49 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 896 | 104.51 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 910 | 104.55 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 23 |
| 934 | 104.64 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 939 | 104.66 | wind | 1 | 14400 | < th | dose dependent | rect. | 11 | 22 |
| 946 | 104.68 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 959 | 104.73 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 23 |
| 970 | 104.81 | wind | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 983 | 104.87 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 23 |