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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0528200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.59 (0.0507) R2 : 0.772
β1 : -0.0661 (0.187) R2dD : 1.77e-05 R2D : -0.0679
β2 : 3.94 (0.106) R2dC : 0.698 R2C : 0.661
β3 : -0.983 (0.171) R2dE : 0.0256 R2E : -0.073
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.26 (0.522) R2dD*E : 0.0441 R2D*E : -0.0104
γ1 : 0.936 (0.1) R2dN8 : 0.0668 R2N8 : -0.00374
σ : 0.833
deviance : 320.02
__
_____
C
peak time of C : 11.2
E
wheather : radiation
threshold : 43.94
memory length : 23036
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
319.38 0.84 4.6 -0.046 3.95 -0.95 0.466 -4.24 0.941 11.3 42.58 23091 -- --
347.71 0.868 4.76 -0.0574 3.96 -0.974 0.389 -- 0.917 11.2 35 14928 -- --
320.02 0.833 4.59 -0.0661 3.94 -0.983 -- -4.26 0.936 11.2 43.94 23036 -- --
345.91 0.866 4.7 0.0641 3.99 -0.997 -- -- 0.974 11.4 30.05 14948 -- --
1286.84 1.67 4.64 -0.281 -- -1.51 -- -5.42 0.971 -- 48.58 21245 -- --
376.54 0.91 4.8 0.306 3.99 -- 0.513 -- 0.675 11.3 -- -- -- --
377.66 0.91 4.8 0.327 3.99 -- -- -- 0.677 11.3 -- -- -- --
960.9 1.45 4.88 0.208 -- 3.77 -- -- 0.694 -- 9.916 15475 -- --
345 0.865 4.76 -- 3.83 -1.03 -- -- 0.997 11.3 20.58 14922 -- --
1371.77 1.73 4.9 0.227 -- -- -- -- 0.639 -- -- -- -- --
380.48 0.912 4.81 -- 3.98 -- -- -- 0.64 11.3 -- -- -- --
769.22 1.3 4.89 -- -- 4.32 -- -- 0.662 -- -3.212 12570 -- --
1373.13 1.73 4.9 -- -- -- -- -- 0.614 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 296.11 humidity 90.0 14400 < th dose independent rect. 6 1
2 299.53 wind 7.0 43200 > th dose dependent rect. 18 1
3 299.64 humidity 90.0 14400 > th dose independent rect. 6 1
4 300.52 humidity 90.0 14400 < th dose independent rect. 4 3
6 300.99 humidity 80.0 14400 > th dose dependent rect. 6 1
7 301.05 wind 9.0 43200 > th dose independent rect. 18 1
8 301.06 humidity 80.0 14400 > th dose dependent rect. 23 10
9 301.34 humidity 80.0 14400 > th dose dependent rect. 2 7
11 301.54 humidity 80.0 14400 > th dose dependent rect. 4 4
13 301.58 wind 9.0 43200 < th dose independent rect. 18 1
19 302.24 humidity 80.0 14400 > th dose dependent rect. 23 1
20 302.38 humidity 60.0 14400 > th dose dependent rect. 6 1
26 302.90 precipitation 0.1 43200 > th dose dependent rect. 2 2
27 303.22 humidity 50.0 14400 > th dose dependent rect. 23 1
33 303.57 precipitation 0.1 43200 > th dose independent rect. 2 2
35 303.78 precipitation 0.1 43200 < th dose independent rect. 2 2
36 303.78 precipitation 0.1 43200 < th dose dependent rect. 2 2
44 304.24 humidity 50.0 14400 > th dose dependent rect. 20 12
50 304.46 humidity 90.0 14400 > th dose dependent rect. 1 1
57 304.73 humidity 50.0 14400 > th dose dependent rect. 22 3
81 305.49 humidity 90.0 14400 < th dose dependent rect. 22 2
107 306.02 humidity 80.0 14400 > th dose dependent sin 8 NA
114 306.26 humidity 90.0 14400 > th dose independent rect. 1 3
119 306.32 humidity 90.0 14400 < th dose independent rect. 23 9
125 306.46 precipitation 0.1 43200 > th dose dependent rect. 24 8
131 306.52 wind 5.0 14400 < th dose independent rect. 18 1
136 306.54 humidity 50.0 14400 > th dose dependent rect. 20 8
191 307.28 humidity 90.0 14400 > th dose independent rect. 1 6
193 307.30 humidity 80.0 43200 > th dose dependent rect. 8 1
200 307.42 precipitation 0.1 43200 > th dose dependent rect. 2 10
201 307.43 precipitation 0.1 43200 > th dose independent rect. 24 8
205 307.46 humidity 90.0 14400 < th dose dependent rect. 21 4
208 307.47 precipitation 0.1 43200 < th dose independent rect. 24 8
209 307.47 precipitation 0.1 43200 < th dose dependent rect. 24 8
230 307.66 humidity 90.0 14400 < th dose independent rect. 23 17
410 308.89 wind 3.0 14400 > th dose dependent rect. 18 1
473 309.34 precipitation 0.1 43200 > th dose dependent rect. 23 15
487 309.47 humidity 80.0 43200 > th dose independent rect. 9 2
500 309.62 humidity 80.0 43200 < th dose independent rect. 9 2
533 309.94 humidity 90.0 14400 < th dose independent rect. 23 1
565 310.29 humidity 90.0 43200 < th dose dependent rect. 14 1
589 310.51 precipitation 0.1 43200 > th dose dependent rect. 2 15
591 310.52 precipitation 0.1 43200 > th dose dependent sin 5 NA
593 310.53 humidity 90.0 43200 < th dose dependent rect. 11 4
618 310.76 humidity 90.0 43200 < th dose dependent rect. 9 7
625 310.83 humidity 90.0 14400 > th dose independent rect. 23 16
665 311.08 humidity 80.0 14400 > th dose independent rect. 19 5
742 311.66 precipitation 0.1 43200 > th dose dependent rect. 23 18
749 311.72 humidity 70.0 43200 > th dose dependent rect. 7 7
757 311.78 humidity 90.0 14400 < th dose dependent rect. 19 13
801 312.04 precipitation 0.1 43200 > th dose independent sin 6 NA
802 312.05 precipitation 0.1 43200 < th dose independent sin 6 NA
803 312.05 precipitation 0.1 43200 < th dose dependent sin 6 NA
810 312.11 humidity 70.0 43200 < th dose independent rect. 18 1
850 312.29 precipitation 0.1 43200 < th dose independent rect. 2 16
851 312.29 precipitation 0.1 43200 < th dose dependent rect. 2 16
853 312.30 precipitation 0.1 43200 > th dose independent rect. 2 16
862 312.33 humidity 70.0 43200 > th dose dependent rect. 7 10
865 312.35 precipitation 0.1 43200 < th dose independent rect. 2 18
868 312.35 precipitation 0.1 43200 < th dose dependent rect. 2 18
870 312.36 precipitation 0.1 43200 > th dose dependent rect. 23 21
881 312.39 humidity 90.0 14400 > th dose dependent rect. 5 10
887 312.42 precipitation 0.1 43200 > th dose independent rect. 2 18
917 312.58 humidity 90.0 14400 < th dose independent sin 6 NA
919 312.58 humidity 80.0 14400 < th dose independent rect. 19 4
923 312.61 humidity 90.0 14400 < th dose independent rect. 1 3
930 312.64 wind 3.0 43200 < th dose dependent rect. 3 2
978 312.85 precipitation 0.1 43200 > th dose dependent rect. 1 19
979 312.86 precipitation 0.1 43200 > th dose independent rect. 23 21
980 312.86 precipitation 0.1 43200 < th dose independent rect. 23 21
981 312.86 humidity 90.0 43200 < th dose dependent sin 23 NA
984 312.86 precipitation 0.1 43200 < th dose dependent rect. 23 21
995 312.89 precipitation 0.1 43200 > th dose independent rect. 23 19