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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0528100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.48 (0.0511) R2 : 0.654
β1 : 2.43 (0.204) R2dD : 0.139 R2D : 0.0949
β2 : 1.13 (0.181) R2dC : 0.0695 R2C : 0.238
β3 : -2.27 (0.214) R2dE : 0.223 R2E : 0.459
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -2.42 (0.526) R2dD*E : 0.0184 R2D*E : -0.0503
γ1 : 0.675 (0.119) R2dN8 : 0.0421 R2N8 : 0.0474
σ : 0.927
deviance : 395.73
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C
peak time of C : 23.4
E
wheather : temperature
threshold : 24.7
memory length : 617
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 0.521
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
398.19 0.938 5.46 2.55 1.15 -2.18 -1.28 -3.53 0.745 22.8 24.79 702 0.842 --
420.04 0.955 5.5 2.28 1.1 -2.26 0.222 -- 0.624 23.6 24.8 728 2.57 --
395.73 0.927 5.48 2.43 1.13 -2.27 -- -2.42 0.675 23.4 24.7 617 0.521 --
411.53 0.945 5.52 2.02 0.961 -2.4 -- -- 0.557 23.2 24.73 642 0.525 --
421.53 0.956 5.5 2.18 -- -3.29 -- -1.81 0.495 -- 25.03 698 0.705 --
482.91 1.03 5.44 2.49 2.68 -- 1.45 -- 1.11 22.4 -- -- -- --
491.41 1.04 5.45 2.43 2.67 -- -- -- 1.1 22.4 -- -- -- --
431.32 0.967 5.53 1.9 -- -3.31 -- -- 0.417 -- 25 703 0.751 --
510.2 1.05 5.59 -- 0.596 -2.96 -- -- 0.247 22.7 24.8 698 0.657 --
927.32 1.42 5.38 2.47 -- -- -- -- 1.11 -- -- -- -- --
646.83 1.19 5.51 -- 2.68 -- -- -- 0.831 22.5 -- -- -- --
517.01 1.06 5.61 -- -- -3.56 -- -- 0.0816 -- 24.78 697 0.632 --
1088.6 1.54 5.44 -- -- -- -- -- 0.836 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 400.07 temperature 25 720 < th dose independent rect. 1 9
2 400.65 temperature 25 720 > th dose independent rect. 24 11
12 403.13 temperature 25 720 < th dose independent sin 7 NA
18 404.62 temperature 25 720 > th dose independent sin 7 NA
23 404.95 temperature 20 720 > th dose dependent rect. 23 10
33 406.78 temperature 20 720 > th dose dependent rect. 23 12
61 409.16 temperature 30 720 < th dose dependent rect. 22 12
83 410.69 temperature 20 720 > th dose dependent sin 7 NA
109 412.29 temperature 25 270 < th dose dependent rect. 6 3
137 413.28 temperature 10 720 > th dose dependent sin 7 NA
146 413.59 temperature 30 720 < th dose dependent sin 8 NA
157 413.99 temperature 25 270 < th dose dependent rect. 5 5
204 415.19 temperature 10 720 > th dose dependent rect. 2 9
258 416.53 temperature 25 270 < th dose dependent rect. 7 1
298 417.51 temperature 25 4320 < th dose independent rect. 23 4
304 417.65 temperature 25 4320 < th dose independent rect. 2 1
410 419.30 temperature 25 270 < th dose independent rect. 5 6
511 420.76 temperature 25 4320 > th dose independent rect. 23 2
520 420.89 temperature 25 720 < th dose dependent rect. 4 22
592 421.76 temperature 25 720 < th dose dependent no NA NA
644 422.21 temperature 25 720 < th dose dependent rect. 1 23
653 422.29 temperature 20 1440 > th dose dependent rect. 24 1
657 422.32 temperature 25 4320 > th dose independent rect. 21 8
816 423.59 temperature 25 1440 < th dose dependent rect. 3 15
945 424.30 humidity 80 43200 > th dose dependent rect. 21 2