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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0527600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.32 (0.0294) R2 : 0.143
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.57 (0.0765) R2dC : 0.104 R2C : 0.0882
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.295 (0.0618) R2dN8 : 0.0552 R2N8 : 0.0389
σ : 0.554
deviance : 140.18
__
_____
C
peak time of C : 17.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
132.69 0.541 3.33 0.404 0.565 -0.309 -0.171 -1.16 0.277 17.2 61 4090 -- --
134.13 0.539 3.34 0.359 0.595 -0.35 -0.189 -- 0.231 17.2 61 3393 -- --
132.77 0.537 3.33 0.404 0.563 -0.309 -- -1.16 0.276 17.2 61 4090 -- --
134.21 0.54 3.34 0.362 0.593 -0.35 -- -- 0.227 17.2 61.04 3394 -- --
149.33 0.569 3.33 0.403 -- -0.367 -- -1.18 0.266 -- 60.99 4110 -- --
137.09 0.549 3.31 0.34 0.577 -- -0.142 -- 0.333 17 -- -- -- --
137.14 0.548 3.31 0.34 0.576 -- -- -- 0.332 17 -- -- -- --
150.85 0.572 3.33 0.383 -- -0.364 -- -- 0.224 -- 55.94 4279 -- --
137.63 0.546 3.34 -- 0.58 -0.313 -- -- 0.211 17.2 62.95 3406 -- --
154.54 0.581 3.31 0.319 -- -- -- -- 0.318 -- -- -- -- --
140.18 0.554 3.32 -- 0.57 -- -- -- 0.295 17.1 -- -- -- --
153.77 0.578 3.34 -- -- -0.436 -- -- 0.166 -- 62.1 4127 -- --
157.22 0.585 3.31 -- -- -- -- -- 0.282 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 128.11 humidity 90 270 > th dose dependent rect. 12 2
2 128.23 humidity 90 270 > th dose independent rect. 12 2
3 128.59 humidity 90 30 > th dose dependent rect. 13 3
7 128.60 humidity 90 30 > th dose independent rect. 13 3
11 128.62 humidity 90 30 > th dose dependent rect. 13 1
15 128.63 humidity 90 30 > th dose independent rect. 13 1
50 129.62 wind 1 90 < th dose dependent rect. 12 1
51 130.05 temperature 30 10 > th dose dependent rect. 11 2
90 130.65 wind 7 270 > th dose dependent rect. 18 3
92 130.76 wind 7 270 > th dose independent rect. 18 1
93 130.77 wind 7 270 > th dose independent rect. 18 3
95 130.79 wind 7 270 > th dose dependent rect. 18 1
97 130.81 wind 5 90 > th dose independent rect. 20 1
98 130.82 temperature 30 270 > th dose independent rect. 11 1
142 131.03 temperature 30 10 > th dose dependent sin 7 NA
143 131.03 radiation 10 270 < th dose dependent rect. 12 3
150 131.23 temperature 30 10 > th dose independent rect. 11 1
157 131.36 radiation 10 270 < th dose dependent rect. 13 1
162 131.43 wind 1 90 < th dose independent rect. 12 1
166 131.45 temperature 25 720 > th dose independent rect. 3 7
190 131.55 temperature 25 720 < th dose independent rect. 7 6
270 131.69 temperature 30 90 > th dose independent sin 7 NA
286 131.77 temperature 20 720 > th dose dependent rect. 10 1
310 131.82 temperature 25 720 > th dose dependent rect. 24 11
312 131.83 temperature 25 720 < th dose independent rect. 7 3
315 131.85 temperature 30 10 > th dose independent rect. 17 19
373 131.97 humidity 90 14400 > th dose dependent rect. 18 1
395 132.01 wind 3 90 > th dose dependent rect. 20 1
414 132.07 humidity 90 1440 > th dose independent rect. 13 1
435 132.15 temperature 25 720 > th dose dependent rect. 8 3
457 132.18 temperature 30 90 < th dose independent sin 7 NA
485 132.23 humidity 70 4320 < th dose independent rect. 9 4
489 132.23 atmosphere 995 43200 > th dose independent rect. 20 15
496 132.25 atmosphere 995 43200 > th dose independent sin 8 NA
497 132.25 humidity 90 1440 > th dose dependent rect. 13 1
513 132.26 atmosphere 995 43200 < th dose independent sin 8 NA
514 132.26 humidity 90 4320 > th dose independent rect. 7 2
521 132.28 atmosphere 995 43200 < th dose independent rect. 21 13
529 132.29 humidity 90 1440 > th dose dependent rect. 11 3
596 132.36 atmosphere 995 43200 < th dose dependent sin 11 NA
599 132.37 radiation 10 1440 < th dose independent rect. 12 1
600 132.37 humidity 70 4320 > th dose independent rect. 8 5
611 132.40 wind 1 1440 < th dose independent rect. 9 2
620 132.41 temperature 25 720 < th dose dependent rect. 6 9
622 132.42 humidity 90 4320 < th dose independent rect. 7 2
628 132.42 humidity 70 4320 < th dose dependent rect. 12 1
629 132.42 atmosphere 995 43200 < th dose dependent rect. 21 12
634 132.43 atmosphere 995 43200 > th dose independent rect. 4 4
636 132.43 temperature 25 720 < th dose independent rect. 2 11
640 132.44 humidity 90 10 < th dose independent rect. 20 2
653 132.45 atmosphere 995 43200 > th dose independent rect. 2 7
674 132.47 atmosphere 995 43200 < th dose independent rect. 1 8
677 132.47 humidity 90 30 < th dose dependent rect. 20 2
678 132.47 radiation 10 4320 < th dose dependent rect. 8 2
679 132.47 atmosphere 995 43200 < th dose dependent rect. 3 5
681 132.48 wind 1 1440 > th dose independent rect. 10 1
689 132.49 atmosphere 995 43200 < th dose independent rect. 4 4
701 132.51 radiation 10 4320 > th dose independent rect. 8 3
704 132.51 humidity 90 4320 > th dose dependent rect. 7 1
737 132.53 humidity 60 4320 < th dose dependent rect. 15 1
777 132.56 radiation 10 270 < th dose independent rect. 11 5
778 132.56 temperature 20 10 > th dose independent rect. 14 8
809 132.58 atmosphere 1015 4320 > th dose dependent rect. 6 1
821 132.60 humidity 70 4320 < th dose independent sin 6 NA
860 132.61 atmosphere 995 43200 < th dose dependent rect. 12 18
863 132.62 humidity 90 4320 > th dose independent rect. 6 5
868 132.62 humidity 90 4320 > th dose dependent rect. 6 7
877 132.64 humidity 90 4320 > th dose dependent rect. 6 5
881 132.64 humidity 90 4320 > th dose dependent rect. 6 14
895 132.66 humidity 70 4320 > th dose independent sin 7 NA
911 132.68 humidity 90 14400 > th dose dependent rect. 15 6
924 132.69 temperature 20 720 > th dose independent rect. 3 19
945 132.72 wind 1 43200 > th dose dependent rect. 1 1
959 132.73 humidity 90 14400 > th dose dependent rect. 17 4