Os08g0525800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os08g0525800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.73 | 0.292 | 3.24 | 0.162 | 0.188 | 0.212 | -0.272 | 1.17 | -0.0642 | 6.75 | 90.95 | 5903 | -- | -- |
| 40.44 | 0.296 | 3.24 | 0.0792 | 0.189 | 0.293 | -0.312 | -- | -0.101 | 6.52 | 117.7 | 4339 | -- | -- |
| 38.92 | 0.291 | 3.24 | 0.159 | 0.187 | 0.21 | -- | 1.18 | -0.0626 | 6.95 | 91 | 5914 | -- | -- |
| 40.66 | 0.297 | 3.24 | 0.077 | 0.189 | 0.291 | -- | -- | -0.1 | 6.79 | 141.3 | 4337 | -- | -- |
| 40.74 | 0.297 | 3.25 | 0.162 | -- | 0.214 | -- | 1.17 | -0.0607 | -- | 91 | 5838 | -- | -- |
| 41.49 | 0.302 | 3.23 | 0.067 | 0.187 | -- | -0.292 | -- | -0.039 | 6.65 | -- | -- | -- | -- |
| 41.69 | 0.302 | 3.23 | 0.0629 | 0.186 | -- | -- | -- | -0.0379 | 6.89 | -- | -- | -- | -- |
| 42.49 | 0.304 | 3.25 | 0.0799 | -- | 0.287 | -- | -- | -0.094 | -- | 149 | 4279 | -- | -- |
| 40.81 | 0.298 | 3.24 | -- | 0.188 | 0.281 | -- | -- | -0.106 | 6.78 | 182 | 4334 | -- | -- |
| 43.51 | 0.308 | 3.23 | 0.0668 | -- | -- | -- | -- | -0.0344 | -- | -- | -- | -- | -- |
| 41.8 | 0.302 | 3.23 | -- | 0.187 | -- | -- | -- | -0.0449 | 6.87 | -- | -- | -- | -- |
| 42.66 | 0.304 | 3.25 | -- | -- | 0.279 | -- | -- | -0.101 | -- | 151.9 | 4276 | -- | -- |
| 43.63 | 0.308 | 3.23 | -- | -- | -- | -- | -- | -0.0418 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.92 | radiation | 10 | 30 | > th | dose independent | rect. | 7 | 1 |
| 2 | 35.94 | humidity | 80 | 10 | < th | dose independent | rect. | 6 | 2 |
| 6 | 36.27 | humidity | 80 | 10 | < th | dose independent | rect. | 23 | 9 |
| 27 | 36.87 | radiation | 10 | 10 | > th | dose independent | rect. | 16 | 16 |
| 53 | 38.10 | humidity | 80 | 14400 | < th | dose dependent | rect. | 3 | 6 |
| 54 | 38.11 | temperature | 25 | 30 | > th | dose independent | rect. | 7 | 1 |
| 57 | 38.17 | humidity | 90 | 90 | < th | dose dependent | rect. | 1 | 7 |
| 63 | 38.25 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 77 | 38.49 | humidity | 80 | 14400 | < th | dose dependent | rect. | 23 | 11 |
| 83 | 38.55 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 8 | 23 |
| 84 | 38.56 | humidity | 70 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 91 | 38.58 | humidity | 70 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 104 | 38.60 | humidity | 70 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 124 | 38.69 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 7 | 1 |
| 128 | 38.71 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 152 | 38.80 | atmosphere | 995 | 720 | > th | dose independent | rect. | 23 | 16 |
| 157 | 38.82 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 161 | 38.82 | humidity | 50 | 4320 | > th | dose dependent | rect. | 23 | 16 |
| 163 | 38.83 | humidity | 70 | 4320 | > th | dose dependent | rect. | 3 | 10 |
| 164 | 38.84 | radiation | 10 | 10 | > th | dose independent | sin | 11 | NA |
| 175 | 38.86 | humidity | 50 | 4320 | > th | dose dependent | rect. | 2 | 13 |
| 178 | 38.87 | humidity | 60 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 187 | 38.88 | humidity | 50 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 196 | 38.88 | humidity | 90 | 4320 | < th | dose dependent | rect. | 23 | 16 |
| 199 | 38.89 | humidity | 50 | 4320 | > th | dose dependent | sin | 5 | NA |
| 223 | 38.91 | wind | 5 | 30 | < th | dose independent | rect. | 7 | 1 |
| 224 | 38.91 | humidity | 80 | 4320 | > th | dose independent | rect. | 6 | 7 |
| 225 | 38.91 | humidity | 80 | 4320 | < th | dose independent | rect. | 6 | 7 |
| 233 | 38.91 | humidity | 50 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 247 | 38.92 | humidity | 70 | 4320 | > th | dose independent | rect. | 8 | 7 |
| 255 | 38.92 | wind | 7 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 279 | 38.94 | wind | 1 | 30 | > th | dose independent | rect. | 7 | 1 |
| 294 | 38.94 | humidity | 90 | 4320 | < th | dose dependent | rect. | 3 | 13 |
| 307 | 38.95 | humidity | 70 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 323 | 38.95 | humidity | 90 | 4320 | < th | dose dependent | sin | 5 | NA |
| 339 | 38.96 | humidity | 90 | 4320 | < th | dose dependent | rect. | 11 | 2 |
| 447 | 39.00 | humidity | 70 | 4320 | > th | dose independent | sin | 3 | NA |
| 563 | 39.02 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 3 | 23 |
| 631 | 39.04 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 633 | 39.04 | humidity | 60 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 650 | 39.05 | humidity | 80 | 4320 | < th | dose independent | sin | 3 | NA |
| 943 | 39.11 | humidity | 80 | 4320 | < th | dose dependent | rect. | 14 | 1 |
| 992 | 39.12 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 993 | 39.12 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 7 | 1 |