Os08g0519300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, family 18 protein.
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Os08g0519300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, family 18 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.01 | 0.352 | 2.64 | 1.89 | 0.00736 | 15.5 | -0.455 | -95.1 | 0.0656 | 22.9 | 995 | 1442 | -- | -- |
| 57.79 | 0.357 | 2.97 | -0.0305 | 0.0114 | -0.44 | 0.5 | -- | 0.0664 | 9.85 | 996.6 | 1321 | -- | -- |
| 56.84 | 0.351 | 2.65 | 1.86 | 0.0282 | 15.2 | -- | -92.9 | 0.0662 | 3.68 | 995.1 | 1308 | -- | -- |
| 57.24 | 0.352 | 2.97 | -0.0215 | 0.00434 | -0.784 | -- | -- | 0.0622 | 9.56 | 996.3 | 1289 | -- | -- |
| 56.88 | 0.351 | 2.63 | 1.98 | -- | 16.2 | -- | -98.8 | 0.067 | -- | 995.2 | 1298 | -- | -- |
| 59.67 | 0.362 | 2.97 | -0.00596 | 0.0114 | -- | 0.499 | -- | 0.0565 | 9.81 | -- | -- | -- | -- |
| 60.47 | 0.364 | 2.97 | 0.011 | 0.0545 | -- | -- | -- | 0.056 | 4.77 | -- | -- | -- | -- |
| 57.24 | 0.352 | 2.96 | -0.0189 | -- | -0.803 | -- | -- | 0.0701 | -- | 996.3 | 1290 | -- | -- |
| 57.17 | 0.352 | 2.97 | -- | 0.0335 | -0.814 | -- | -- | 0.074 | 4.54 | 996.3 | 1290 | -- | -- |
| 60.63 | 0.364 | 2.97 | 0.0131 | -- | -- | -- | -- | 0.0574 | -- | -- | -- | -- | -- |
| 60.48 | 0.364 | 2.97 | -- | 0.0547 | -- | -- | -- | 0.0548 | 4.76 | -- | -- | -- | -- |
| 57.25 | 0.352 | 2.96 | -- | -- | -0.799 | -- | -- | 0.0721 | -- | 996.3 | 1290 | -- | -- |
| 60.63 | 0.363 | 2.97 | -- | -- | -- | -- | -- | 0.056 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.80 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 5 | 1 |
| 2 | 51.98 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 10 | 51.98 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 31 | 52.59 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 32 | 52.61 | wind | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 33 | 52.61 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 35 | 52.62 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 37 | 52.64 | temperature | 25.0 | 30 | > th | dose independent | rect. | 5 | 1 |
| 38 | 52.64 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 42 | 52.65 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 43 | 52.65 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 46 | 52.65 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 49 | 52.66 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 54 | 52.67 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 58 | 52.67 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 61 | 52.67 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 62 | 52.67 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 64 | 52.67 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 69 | 52.67 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 70 | 52.67 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 71 | 52.67 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 76 | 52.67 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 79 | 52.75 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 80 | 52.76 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 4 | 6 |
| 81 | 52.77 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 82 | 52.81 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 102 | 53.04 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 151 | 53.78 | temperature | 25.0 | 270 | > th | dose independent | rect. | 2 | 1 |
| 153 | 53.86 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 176 | 54.44 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 183 | 54.50 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 196 | 54.62 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 201 | 54.62 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 230 | 54.79 | atmosphere | 1000.0 | 30 | < th | dose independent | rect. | 4 | 7 |
| 232 | 54.80 | temperature | 25.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 292 | 55.08 | wind | 1.0 | 30 | < th | dose independent | rect. | 24 | 3 |
| 346 | 55.27 | atmosphere | 1000.0 | 720 | < th | dose dependent | sin | 9 | NA |
| 354 | 55.29 | atmosphere | 1000.0 | 270 | < th | dose dependent | sin | 6 | NA |
| 380 | 55.39 | wind | 1.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 392 | 55.44 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 2 | 19 |
| 425 | 55.51 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 17 | 12 |
| 448 | 55.56 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 451 | 55.57 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 2 | 14 |
| 488 | 55.65 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 8 | 13 |
| 493 | 55.67 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 8 | 21 |
| 494 | 55.67 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 502 | 55.69 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 503 | 55.69 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 506 | 55.69 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 510 | 55.69 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 519 | 55.69 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 520 | 55.69 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 541 | 55.69 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 545 | 55.69 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 575 | 55.73 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 581 | 55.74 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 587 | 55.75 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 11 | 17 |
| 594 | 55.76 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 23 | 22 |
| 603 | 55.78 | wind | 1.0 | 10 | < th | dose independent | rect. | 17 | 10 |
| 622 | 55.79 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 8 | 3 |
| 627 | 55.80 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 8 | 2 |
| 633 | 55.80 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 634 | 55.80 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 639 | 55.81 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 8 | 1 |
| 677 | 55.84 | wind | 1.0 | 30 | < th | dose dependent | rect. | 24 | 3 |
| 680 | 55.85 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 691 | 55.88 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 3 | 4 |
| 692 | 55.88 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 20 | 10 |
| 702 | 55.89 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 723 | 55.93 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 2 | 9 |
| 753 | 55.96 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 761 | 55.97 | atmosphere | 995.0 | 1440 | > th | dose independent | sin | 3 | NA |
| 777 | 55.98 | atmosphere | 995.0 | 1440 | > th | dose independent | sin | 14 | NA |
| 802 | 56.01 | atmosphere | 995.0 | 1440 | > th | dose independent | no | NA | NA |
| 803 | 56.01 | atmosphere | 995.0 | 1440 | < th | dose independent | sin | 7 | NA |
| 827 | 56.01 | atmosphere | 995.0 | 1440 | < th | dose independent | no | NA | NA |
| 828 | 56.01 | atmosphere | 995.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 964 | 56.01 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 19 | 13 |