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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0519000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0197) R2 : 0.288
β1 : -0.307 (0.0733) R2dD : 0.0292 R2D : -0.00265
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.29 (0.144) R2dE : 0.129 R2E : 0.0646
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -12 (1.05) R2dD*E : 0.218 R2D*E : 0.129
γ1 : -0.0562 (0.0422) R2dN8 : 0.00371 R2N8 : 0.00233
σ : 0.369
deviance : 62.85
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.96
memory length : 31
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.01
open length of G : 1.05

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
62.38 0.371 3.16 -0.319 0.0874 1.32 -0.263 -12 -0.0643 17.6 25 31 7 1
80.7 0.422 3.15 -0.168 0.0664 0.983 0.00753 -- -0.0495 16.6 24.3 42 7.33 0.982
62.54 0.368 3.16 -0.315 0.0854 1.31 -- -11.9 -0.0646 17.1 25.01 32 7 1
80.7 0.421 3.15 -0.168 0.0664 0.983 -- -- -0.0494 16.6 24.35 41 7.32 0.973
62.85 0.369 3.16 -0.307 -- 1.29 -- -12 -0.0562 -- 24.96 31 7.01 1.05
87.13 0.438 3.16 -0.167 0.0499 -- -0.0288 -- -0.0694 12.5 -- -- -- --
87.14 0.437 3.16 -0.168 0.05 -- -- -- -0.0695 12.5 -- -- -- --
80.84 0.419 3.16 -0.171 -- 0.962 -- -- -0.0645 -- 24.7 22 6.99 1.08
81.45 0.423 3.15 -- 0.0695 0.983 -- -- -0.0307 16.5 24.74 32 7.39 0.979
87.29 0.437 3.16 -0.17 -- -- -- -- -0.0704 -- -- -- -- --
87.88 0.439 3.15 -- 0.0525 -- -- -- -0.0508 12.7 -- -- -- --
81.61 0.421 3.15 -- -- 0.963 -- -- -0.0449 -- 24.68 23 7 1.15
88.06 0.438 3.15 -- -- -- -- -- -0.0515 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 62.41 temperature 25.0 30 > th dose independent rect. 7 1
3 72.07 radiation 10.0 30 > th dose independent rect. 7 1
4 72.09 temperature 25.0 10 > th dose dependent rect. 7 1
6 72.25 humidity 80.0 10 < th dose independent rect. 7 1
13 72.60 humidity 80.0 10 < th dose independent rect. 22 10
56 75.61 wind 3.0 10 < th dose dependent rect. 7 1
58 76.46 atmosphere 1005.0 10 > th dose independent rect. 7 1
65 77.53 wind 3.0 10 < th dose independent rect. 7 1
68 77.83 wind 7.0 4320 > th dose independent rect. 1 1
73 77.83 wind 7.0 4320 > th dose dependent rect. 1 1
81 78.74 temperature 10.0 30 > th dose dependent rect. 8 23
85 79.02 radiation 20.0 10 < th dose independent rect. 7 1
95 79.71 wind 1.0 720 < th dose dependent rect. 21 2
101 80.01 wind 9.0 4320 > th dose independent rect. 19 1
102 80.01 wind 9.0 4320 > th dose dependent rect. 19 1
105 80.10 wind 1.0 720 < th dose independent rect. 22 1
118 80.44 temperature 25.0 90 < th dose independent rect. 6 1
125 80.67 temperature 15.0 10 > th dose independent rect. 8 23
146 80.84 humidity 70.0 10 > th dose independent rect. 7 1
154 80.89 wind 1.0 720 < th dose dependent rect. 18 5
169 81.03 wind 1.0 1440 < th dose dependent rect. 2 1
199 81.31 wind 1.0 30 > th dose independent rect. 7 1
213 81.48 atmosphere 995.0 10 > th dose independent rect. 8 23
218 81.52 temperature 25.0 30 > th dose independent rect. 22 10
223 81.57 atmosphere 995.0 10 > th dose dependent rect. 7 1
237 81.62 precipitation 0.1 10 < th dose independent rect. 7 1
238 81.62 atmosphere 1010.0 30 < th dose independent rect. 8 23
239 81.62 precipitation 0.1 10 < th dose dependent rect. 7 1
242 81.63 temperature 10.0 10 > th dose independent rect. 7 1
244 81.63 temperature 30.0 10 < th dose independent rect. 7 1
245 81.63 humidity 50.0 10 > th dose independent rect. 7 1
247 81.63 atmosphere 995.0 10 > th dose independent rect. 7 1
248 81.63 atmosphere 1015.0 10 < th dose independent rect. 7 1
250 81.63 precipitation 0.1 10 < th dose independent rect. 8 23
252 81.63 temperature 10.0 90 > th dose dependent rect. 8 13
253 81.63 precipitation 0.1 10 < th dose dependent rect. 8 23
259 81.71 wind 9.0 10 < th dose independent rect. 8 23
283 81.81 wind 9.0 1440 < th dose independent rect. 8 1
286 81.81 temperature 10.0 1440 > th dose independent rect. 8 1
291 81.81 humidity 50.0 1440 > th dose independent rect. 8 1
293 81.81 atmosphere 995.0 1440 > th dose independent rect. 8 1
296 81.81 atmosphere 1015.0 1440 < th dose independent rect. 8 1
297 81.81 temperature 10.0 1440 > th dose independent rect. 9 23
316 81.93 humidity 90.0 10 < th dose dependent rect. 7 1
329 82.02 precipitation 0.1 1440 < th dose independent rect. 8 1
332 82.02 precipitation 0.1 1440 < th dose dependent rect. 8 1
334 82.03 radiation 10.0 30 > th dose independent sin 10 NA
341 82.09 wind 1.0 720 > th dose independent rect. 8 20
351 82.15 radiation 40.0 30 < th dose dependent rect. 7 1
355 82.16 temperature 10.0 720 > th dose dependent rect. 8 3
356 82.17 humidity 50.0 10 > th dose independent rect. 8 23
386 82.38 humidity 90.0 30 < th dose dependent rect. 3 5
404 82.45 atmosphere 1015.0 10 < th dose dependent rect. 7 1
406 82.47 wind 1.0 720 < th dose independent rect. 2 1
413 82.48 wind 1.0 720 > th dose independent rect. 18 9
423 82.53 wind 1.0 720 > th dose independent rect. 14 14
450 82.61 temperature 25.0 30 > th dose independent rect. 18 14
459 82.66 wind 1.0 720 > th dose independent rect. 23 5
466 82.70 wind 1.0 1440 > th dose independent rect. 22 1
490 82.77 temperature 25.0 720 < th dose independent rect. 6 1
505 82.83 temperature 25.0 10 > th dose dependent rect. 22 10
519 82.88 wind 9.0 1440 > th dose independent rect. 9 1
549 82.91 wind 1.0 1440 > th dose independent rect. 2 1
580 82.97 radiation 1.0 30 > th dose independent rect. 8 22
624 83.03 temperature 15.0 90 > th dose dependent rect. 8 17
633 83.07 wind 3.0 10 > th dose dependent rect. 8 1
665 83.13 wind 9.0 1440 > th dose dependent rect. 9 1
712 83.24 wind 5.0 14400 > th dose independent rect. 9 3
713 83.24 wind 5.0 14400 < th dose independent rect. 9 3
757 83.32 wind 5.0 14400 > th dose dependent rect. 9 2
758 83.32 wind 5.0 14400 > th dose dependent rect. 8 4
772 83.35 wind 5.0 14400 > th dose independent rect. 10 1
773 83.35 humidity 90.0 1440 > th dose independent rect. 8 1
778 83.36 wind 5.0 14400 < th dose independent rect. 10 1
781 83.36 wind 7.0 14400 < th dose independent rect. 20 16
783 83.36 wind 5.0 14400 > th dose dependent sin 6 NA
795 83.38 wind 5.0 14400 > th dose independent rect. 24 14
798 83.38 wind 5.0 14400 > th dose dependent rect. 4 8
803 83.39 wind 7.0 14400 < th dose independent sin 7 NA
806 83.39 wind 5.0 14400 < th dose independent rect. 24 14
812 83.39 wind 5.0 14400 > th dose dependent rect. 24 13
822 83.40 wind 7.0 14400 > th dose independent rect. 20 16
843 83.42 wind 7.0 14400 > th dose independent sin 7 NA
851 83.42 temperature 20.0 30 > th dose dependent rect. 2 6
853 83.43 wind 5.0 14400 > th dose independent sin 4 NA
869 83.43 wind 5.0 14400 > th dose dependent rect. 21 17
870 83.44 wind 7.0 14400 > th dose independent rect. 4 7
880 83.45 humidity 90.0 1440 < th dose independent rect. 8 1
904 83.47 wind 5.0 14400 < th dose independent sin 4 NA
909 83.47 wind 7.0 14400 < th dose independent rect. 4 7
968 83.51 wind 1.0 720 < th dose independent rect. 18 10
980 83.52 wind 1.0 720 < th dose independent rect. 20 8