Os08g0518600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os08g0518600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 207.81 | 0.677 | 5.89 | -2.85 | 1.46 | -3.43 | 0.471 | -2.5 | 0.406 | 7.43 | 7.819 | 49 | -- | -- |
| 212.72 | 0.679 | 5.85 | -2.51 | 1.46 | -3.44 | 0.473 | -- | 0.498 | 7.34 | -0.7043 | 57 | -- | -- |
| 208.34 | 0.672 | 5.89 | -2.83 | 1.44 | -3.44 | -- | -2.47 | 0.408 | 7.43 | 6.109 | 57 | -- | -- |
| 213.27 | 0.68 | 5.85 | -2.49 | 1.45 | -3.47 | -- | -- | 0.496 | 7.4 | 14.66 | 57 | -- | -- |
| 274.43 | 0.772 | 5.9 | -2.62 | -- | -4.16 | -- | -2.35 | 0.535 | -- | 10.18 | 275 | -- | -- |
| 324.47 | 0.844 | 5.95 | -3.2 | 2.02 | -- | 1.64 | -- | 0.022 | 5.55 | -- | -- | -- | -- |
| 331.01 | 0.852 | 5.96 | -3.19 | 2.03 | -- | -- | -- | 0.0153 | 5.61 | -- | -- | -- | -- |
| 278.18 | 0.777 | 5.86 | -2.26 | -- | -4.22 | -- | -- | 0.635 | -- | 9.006 | 286 | -- | -- |
| 360.85 | 0.885 | 5.77 | -- | 1.29 | -4.09 | -- | -- | 0.886 | 8.06 | 16.73 | 95 | -- | -- |
| 545.15 | 1.09 | 5.99 | -3.12 | -- | -- | -- | -- | 0.0641 | -- | -- | -- | -- | -- |
| 599.19 | 1.15 | 5.88 | -- | 1.98 | -- | -- | -- | 0.371 | 5.68 | -- | -- | -- | -- |
| 403.15 | 0.935 | 5.78 | -- | -- | -4.69 | -- | -- | 0.977 | -- | 16 | 314 | -- | -- |
| 802.64 | 1.32 | 5.91 | -- | -- | -- | -- | -- | 0.411 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 201.97 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 22 |
| 16 | 208.09 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 22 | 208.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 36 | 210.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 40 | 211.19 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 45 | 212.09 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 48 | 212.61 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 49 | 212.67 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 56 | 213.62 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 59 | 213.84 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 66 | 214.22 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 67 | 214.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 70 | 214.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 108 | 216.16 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 116 | 216.44 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 163 | 218.49 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 369 | 227.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 12 |
| 380 | 227.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 432 | 228.45 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 22 |
| 474 | 229.42 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 487 | 229.59 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 506 | 229.91 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 509 | 229.99 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 21 |
| 514 | 230.12 | temperature | 20 | 1440 | > th | dose dependent | sin | 8 | NA |
| 560 | 230.80 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 577 | 231.02 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 602 | 231.48 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 605 | 231.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 21 |
| 641 | 231.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 658 | 232.09 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 23 |
| 716 | 232.64 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 722 | 232.69 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 763 | 232.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 766 | 232.95 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 772 | 232.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 3 |
| 824 | 233.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 844 | 233.49 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 23 |
| 880 | 233.68 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 23 |
| 904 | 233.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 10 |
| 928 | 233.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 8 |
| 948 | 233.97 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 968 | 234.06 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 972 | 234.07 | temperature | 25 | 270 | > th | dose independent | rect. | 3 | 23 |
| 992 | 234.13 | temperature | 25 | 270 | > th | dose independent | rect. | 12 | 23 |