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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0518400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phytosulfokine receptor precursor (EC 2.7.1.37) (Phytosulfokine LRR receptor kinase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.04) R2 : 0.124
β1 : 0.0385 (0.151) R2dD : 0.000147 R2D : -0.002
β2 : 6.56 (1.75) R2dC : 8.64 R2C : -8.55
β3 : 6.6 (1.74) R2dE : 9.32 R2E : -9.57
β4 : -91.9 (14.6) R2dD*C : 91.5 R2D*C : -91.2
β5 : -91.6 (14.6) R2dD*E : 92.2 R2D*E : -92.1
γ1 : -0.152 (0.0832) R2dN8 : 0.00868 R2N8 : 0.00511
σ : 0.73
deviance : 241.33
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C
peak time of C : 15.8
E
wheather : temperature
threshold : 30
memory length : 90
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 3
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
241.33 0.73 2.94 0.0385 6.56 6.6 -91.9 -91.6 -0.152 15.8 30 90 3 --
265.87 0.765 3 -0.258 2.32 -2.27 -0.0282 -- -0.196 2.91 30 90 3 --
265.86 0.765 3 -0.259 2.31 -2.26 -- -0.0754 -0.197 2.91 30 90 3 --
262.32 0.754 3.01 -0.306 2.61 -2.55 -- -- -0.226 3.18 29.5 88 3.47 --
269.23 0.764 3.02 -0.195 -- -0.177 -- -0.23 -0.203 -- 25.3 96 1.89 --
268.78 0.769 3.01 -0.245 0.059 -- -0.893 -- -0.214 20.3 -- -- -- --
271.25 0.771 3.01 -0.218 0.0622 -- -- -- -0.214 19.7 -- -- -- --
266.85 0.761 3.03 -0.287 -- -0.331 -- -- -0.303 -- 24.48 610 2.01 --
264.2 0.757 3.01 -- 2.7 -2.6 -- -- -0.193 3.21 29.5 88 3.4 --
271.46 0.77 3.01 -0.218 -- -- -- -- -0.215 -- -- -- -- --
272.5 0.772 3.01 -- 0.0641 -- -- -- -0.189 19.4 -- -- -- --
267.33 0.762 3 -- -- -0.44 -- -- -0.146 -- 29.7 1483 1.87 --
272.72 0.771 3.01 -- -- -- -- -- -0.19 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 230.42 temperature 30 90 > th dose independent rect. 18 17
2 232.04 temperature 30 90 > th dose independent rect. 9 2
17 238.45 temperature 30 90 > th dose dependent rect. 18 17
18 239.22 temperature 30 10 > th dose independent rect. 10 1
35 239.51 temperature 30 10 > th dose dependent rect. 10 1
52 239.60 temperature 30 90 > th dose dependent rect. 8 3
67 239.86 humidity 60 10 < th dose dependent rect. 15 1
105 240.56 humidity 60 10 < th dose independent rect. 15 1
109 241.01 radiation 30 90 > th dose independent rect. 15 17
111 241.33 temperature 30 90 < th dose independent sin 9 NA
112 241.43 radiation 30 90 > th dose dependent rect. 15 17
115 241.60 radiation 20 10 > th dose independent rect. 16 1
163 242.11 radiation 20 10 > th dose dependent rect. 16 1
272 242.74 temperature 30 90 > th dose independent sin 9 NA
378 244.04 atmosphere 1005 90 < th dose dependent rect. 6 5
379 244.10 temperature 30 10 > th dose dependent rect. 18 17
417 244.43 atmosphere 1000 90 < th dose independent rect. 6 5
437 244.89 atmosphere 1000 90 < th dose independent rect. 6 7
453 244.96 atmosphere 1000 270 < th dose independent rect. 7 1
470 245.07 atmosphere 1000 10 < th dose independent rect. 7 5
471 245.11 wind 1 90 < th dose dependent rect. 15 1
498 245.48 wind 1 90 < th dose dependent rect. 12 4
499 245.52 wind 1 90 < th dose dependent rect. 12 6
544 245.79 atmosphere 1005 10 < th dose dependent rect. 7 5
549 245.80 atmosphere 1005 90 < th dose dependent rect. 6 7
565 245.96 atmosphere 1005 270 < th dose dependent rect. 7 1
617 246.28 atmosphere 1005 10 < th dose dependent rect. 7 3
721 247.09 atmosphere 1005 270 < th dose dependent rect. 4 7
821 247.69 wind 1 90 < th dose independent rect. 15 1
871 248.04 temperature 25 90 > th dose dependent sin 9 NA
940 248.61 wind 3 10 < th dose dependent rect. 16 1
986 249.19 humidity 60 90 < th dose independent sin 13 NA
994 249.29 humidity 60 10 < th dose dependent sin 13 NA