Os08g0515600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os08g0515600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 203.55 | 0.67 | 9.71 | 1.02 | 1.16 | 3.02 | -0.515 | 3.12 | -0.584 | 19.8 | 19.11 | 4489 | -- | -- |
| 206.21 | 0.669 | 9.62 | 1.22 | 1.14 | 2 | -0.37 | -- | -0.469 | 19.7 | 20.55 | 5633 | -- | -- |
| 204.31 | 0.666 | 9.71 | 1.04 | 1.15 | 3 | -- | 3.05 | -0.579 | 19.8 | 19.11 | 4478 | -- | -- |
| 206.12 | 0.669 | 9.63 | 1.19 | 1.19 | 1.87 | -- | -- | -0.483 | 19.8 | 20.78 | 5839 | -- | -- |
| 276.28 | 0.774 | 9.69 | 1.07 | -- | 3.21 | -- | 3.43 | -0.586 | -- | 19.12 | 4405 | -- | -- |
| 233.34 | 0.716 | 9.7 | 0.287 | 1.18 | -- | -0.619 | -- | -0.823 | 19.7 | -- | -- | -- | -- |
| 234.42 | 0.717 | 9.7 | 0.302 | 1.18 | -- | -- | -- | -0.824 | 19.8 | -- | -- | -- | -- |
| 279.15 | 0.778 | 9.6 | 1.15 | -- | 1.9 | -- | -- | -0.54 | -- | 20.31 | 5769 | -- | -- |
| 224.23 | 0.697 | 9.69 | -- | 1.16 | 1.06 | -- | -- | -0.773 | 19.8 | 18.96 | 3160 | -- | -- |
| 309.25 | 0.822 | 9.67 | 0.288 | -- | -- | -- | -- | -0.841 | -- | -- | -- | -- | -- |
| 236.83 | 0.72 | 9.71 | -- | 1.17 | -- | -- | -- | -0.858 | 19.8 | -- | -- | -- | -- |
| 296.09 | 0.801 | 9.66 | -- | -- | 1.24 | -- | -- | -0.778 | -- | 18.8 | 2989 | -- | -- |
| 311.44 | 0.824 | 9.68 | -- | -- | -- | -- | -- | -0.873 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 200.85 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 2 | 200.85 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 3 | 200.94 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 4 | 200.94 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 9 | 203.42 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 13 | 203.66 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 14 | 203.66 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 30 | 204.11 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 31 | 204.11 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 32 | 204.20 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 24 | 16 |
| 49 | 204.32 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 12 | 18 |
| 82 | 204.43 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 83 | 204.43 | temperature | 20.0 | 4320 | < th | dose dependent | sin | 6 | NA |
| 84 | 204.43 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 119 | 204.50 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 23 | 4 |
| 150 | 204.55 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 17 | 13 |
| 161 | 204.56 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 178 | 204.59 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 18 | 16 |
| 185 | 204.60 | temperature | 20.0 | 4320 | < th | dose dependent | no | NA | NA |
| 275 | 204.74 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 2 | 23 |
| 288 | 204.77 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 21 | 11 |
| 291 | 204.77 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 4 | 23 |
| 303 | 204.83 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 321 | 204.92 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 356 | 205.09 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 12 | 22 |
| 359 | 205.10 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 16 | 21 |
| 374 | 205.18 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 14 | 23 |
| 378 | 205.21 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 382 | 205.22 | humidity | 50.0 | 43200 | < th | dose dependent | no | NA | NA |
| 383 | 205.22 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 3 | 18 |
| 406 | 205.23 | humidity | 50.0 | 43200 | < th | dose dependent | sin | 13 | NA |
| 425 | 205.23 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 19 | 23 |
| 428 | 205.24 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 3 | 15 |
| 451 | 205.25 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 488 | 205.27 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 12 | 8 |
| 654 | 205.42 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 12 | 3 |
| 684 | 205.46 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 716 | 205.52 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 731 | 205.54 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 18 | 22 |
| 746 | 205.55 | humidity | 50.0 | 43200 | < th | dose dependent | sin | 9 | NA |
| 754 | 205.57 | humidity | 50.0 | 43200 | < th | dose independent | sin | 14 | NA |
| 773 | 205.60 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 780 | 205.61 | humidity | 50.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 781 | 205.61 | humidity | 50.0 | 43200 | < th | dose independent | no | NA | NA |
| 782 | 205.61 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 3 | 19 |
| 802 | 205.62 | humidity | 50.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 820 | 205.64 | humidity | 50.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 859 | 205.67 | humidity | 50.0 | 43200 | > th | dose independent | sin | 14 | NA |
| 860 | 205.67 | humidity | 50.0 | 43200 | > th | dose independent | no | NA | NA |
| 867 | 205.67 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 3 | 19 |
| 881 | 205.67 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 955 | 205.75 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 976 | 205.76 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 3 | 12 |