Os08g0514800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0514800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.91 | 0.325 | 2.86 | -0.104 | 0.0795 | -0.919 | -0.184 | -0.219 | 0.0961 | 8.58 | 8.998 | 9 | -- | -- |
| 47.92 | 0.322 | 2.86 | -0.104 | 0.0798 | -0.859 | -0.179 | -- | 0.0963 | 8.55 | 9 | 8 | -- | -- |
| 48.02 | 0.323 | 2.86 | -0.111 | 0.0797 | -0.882 | -- | -0.126 | 0.0961 | 8.9 | 8.953 | 8 | -- | -- |
| 48.02 | 0.323 | 2.86 | -0.111 | 0.0799 | -0.847 | -- | -- | 0.0961 | 8.9 | 8.969 | 8 | -- | -- |
| 48.38 | 0.324 | 2.86 | -0.11 | -- | -0.899 | -- | -0.175 | 0.0966 | -- | 8.933 | 8 | -- | -- |
| 50.54 | 0.333 | 2.86 | -0.169 | 0.0865 | -- | -0.164 | -- | 0.0722 | 10.8 | -- | -- | -- | -- |
| 50.65 | 0.333 | 2.86 | -0.176 | 0.0877 | -- | -- | -- | 0.0715 | 10.6 | -- | -- | -- | -- |
| 48.39 | 0.324 | 2.86 | -0.111 | -- | -0.851 | -- | -- | 0.0968 | -- | 8.963 | 8 | -- | -- |
| 48.33 | 0.324 | 2.86 | -- | 0.0799 | -0.906 | -- | -- | 0.11 | 8.87 | 8.9 | 8 | -- | -- |
| 51.12 | 0.334 | 2.87 | -0.178 | -- | -- | -- | -- | 0.0711 | -- | -- | -- | -- | -- |
| 51.47 | 0.336 | 2.86 | -- | 0.089 | -- | -- | -- | 0.0911 | 10.8 | -- | -- | -- | -- |
| 48.7 | 0.325 | 2.86 | -- | -- | -0.909 | -- | -- | 0.11 | -- | 8.909 | 8 | -- | -- |
| 51.96 | 0.336 | 2.86 | -- | -- | -- | -- | -- | 0.0908 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.54 | wind | 9 | 10 | > th | dose independent | rect. | 13 | 1 |
| 13 | 45.54 | wind | 9 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 57 | 47.14 | wind | 9 | 270 | > th | dose independent | rect. | 9 | 5 |
| 70 | 47.16 | wind | 9 | 270 | > th | dose dependent | rect. | 10 | 4 |
| 109 | 47.29 | wind | 9 | 270 | > th | dose independent | rect. | 18 | 20 |
| 115 | 47.33 | wind | 7 | 10 | > th | dose dependent | rect. | 19 | 19 |
| 119 | 47.34 | wind | 9 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 132 | 47.39 | wind | 7 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 168 | 47.46 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 17 |
| 188 | 47.52 | temperature | 10 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 192 | 47.55 | wind | 9 | 270 | > th | dose independent | sin | 6 | NA |
| 207 | 47.58 | radiation | 10 | 10 | < th | dose independent | rect. | 14 | 1 |
| 210 | 47.59 | wind | 9 | 270 | < th | dose independent | sin | 6 | NA |
| 211 | 47.59 | wind | 7 | 720 | < th | dose independent | rect. | 5 | 9 |
| 224 | 47.61 | wind | 9 | 270 | > th | dose dependent | sin | 7 | NA |
| 231 | 47.63 | wind | 7 | 10 | > th | dose independent | rect. | 19 | 20 |
| 234 | 47.65 | wind | 7 | 90 | < th | dose independent | rect. | 5 | 14 |
| 252 | 47.72 | wind | 1 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 257 | 47.73 | wind | 7 | 10 | > th | dose independent | rect. | 9 | 6 |
| 266 | 47.77 | wind | 1 | 30 | > th | dose independent | rect. | 4 | 1 |
| 267 | 47.77 | temperature | 25 | 30 | > th | dose independent | rect. | 4 | 1 |
| 269 | 47.77 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 17 |
| 273 | 47.77 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 9 | 20 |
| 285 | 47.81 | humidity | 90 | 10 | < th | dose independent | rect. | 4 | 1 |
| 304 | 47.83 | radiation | 10 | 270 | < th | dose dependent | rect. | 9 | 2 |
| 319 | 47.85 | temperature | 25 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 371 | 47.92 | wind | 7 | 90 | < th | dose independent | rect. | 5 | 12 |
| 388 | 47.95 | radiation | 10 | 90 | < th | dose independent | rect. | 8 | 21 |
| 391 | 47.96 | wind | 7 | 270 | < th | dose independent | rect. | 3 | 14 |
| 392 | 47.96 | wind | 1 | 30 | < th | dose dependent | rect. | 17 | 9 |
| 411 | 47.99 | wind | 7 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 418 | 47.99 | wind | 7 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 445 | 48.03 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 9 | 5 |
| 448 | 48.04 | wind | 1 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 454 | 48.05 | wind | 7 | 30 | < th | dose independent | rect. | 5 | 23 |
| 456 | 48.05 | wind | 1 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 462 | 48.06 | temperature | 15 | 90 | > th | dose independent | rect. | 5 | 14 |
| 479 | 48.07 | wind | 1 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 487 | 48.07 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 9 | 14 |
| 510 | 48.10 | wind | 7 | 10 | < th | dose independent | rect. | 5 | 12 |
| 548 | 48.13 | wind | 9 | 720 | < th | dose dependent | rect. | 5 | 9 |
| 583 | 48.16 | wind | 9 | 270 | < th | dose independent | rect. | 10 | 23 |
| 614 | 48.17 | wind | 9 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 617 | 48.18 | radiation | 10 | 30 | < th | dose independent | rect. | 9 | 6 |
| 630 | 48.18 | wind | 9 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 640 | 48.20 | wind | 9 | 10 | > th | dose independent | rect. | 13 | 7 |
| 826 | 48.31 | radiation | 10 | 90 | < th | dose independent | rect. | 12 | 17 |
| 828 | 48.31 | wind | 7 | 10 | > th | dose dependent | sin | 4 | NA |
| 854 | 48.33 | wind | 5 | 720 | > th | dose independent | rect. | 8 | 1 |
| 880 | 48.35 | wind | 9 | 1440 | < th | dose independent | rect. | 6 | 4 |
| 912 | 48.36 | wind | 1 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 943 | 48.37 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 950 | 48.38 | wind | 1 | 10 | < th | dose independent | rect. | 1 | 1 |
| 965 | 48.39 | wind | 9 | 10 | < th | dose independent | sin | 2 | NA |
| 991 | 48.39 | radiation | 10 | 10 | < th | dose dependent | rect. | 20 | 19 |