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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0514300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase C48, SUMO/Sentrin/Ubl1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0282) R2 : 0.133
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.496 (0.0594) R2dN8 : 0.171 R2N8 : 0.133
σ : 0.531
deviance : 129.38
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
116.44 0.507 2.98 -0.0849 0.0506 0.358 -0.584 -0.75 0.463 7.49 21.91 29 -- --
118.69 0.507 2.97 -0.101 0.0501 0.341 -0.655 -- 0.471 7.52 22.61 34 -- --
117.31 0.504 2.97 -0.0999 0.0521 0.353 -- -0.864 0.466 7.36 21.94 28 -- --
120.38 0.511 2.97 -0.091 0.0863 0.311 -- -- 0.464 11 22.62 34 -- --
117.43 0.505 2.98 -0.0933 -- 0.365 -- -0.89 0.463 -- 21.91 28 -- --
122.1 0.518 2.96 -0.0611 0.286 -- -0.646 -- 0.491 11.4 -- -- -- --
123.8 0.521 2.96 -0.0859 0.291 -- -- -- 0.489 12 -- -- -- --
120.72 0.512 2.97 -0.108 -- 0.372 -- -- 0.467 -- 22.6 34 -- --
120.68 0.512 2.97 -- 0.0863 0.311 -- -- 0.464 11 22.62 34 -- --
129.14 0.531 2.97 -0.095 -- -- -- -- 0.485 -- -- -- -- --
123.99 0.521 2.96 -- 0.292 -- -- -- 0.499 12 -- -- -- --
121.02 0.512 2.97 -- -- 0.372 -- -- 0.474 -- 22.62 34 -- --
129.38 0.531 2.97 -- -- -- -- -- 0.496 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 108.43 precipitation 0.1 90 > th dose independent rect. 21 1
5 108.43 precipitation 0.1 90 > th dose dependent rect. 21 1
9 112.44 wind 1.0 90 < th dose independent rect. 12 3
11 112.47 wind 1.0 90 < th dose dependent rect. 12 3
19 112.52 wind 1.0 10 < th dose independent rect. 14 4
54 112.55 wind 1.0 30 < th dose dependent rect. 8 7
79 112.62 temperature 25.0 30 > th dose independent rect. 21 1
80 112.62 temperature 25.0 10 > th dose independent rect. 20 3
178 112.89 wind 1.0 30 < th dose independent rect. 8 7
205 113.06 humidity 90.0 90 < th dose dependent rect. 3 5
211 113.08 atmosphere 1005.0 10 > th dose dependent rect. 7 1
214 113.10 humidity 90.0 90 < th dose dependent rect. 6 2
226 113.14 radiation 30.0 10 > th dose independent rect. 15 18
257 113.36 radiation 10.0 90 > th dose dependent rect. 6 1
307 113.41 radiation 30.0 10 > th dose dependent rect. 15 18
320 113.47 radiation 30.0 10 > th dose dependent rect. 7 1
352 113.48 radiation 30.0 10 > th dose independent rect. 7 1
383 113.50 humidity 80.0 10 < th dose dependent rect. 20 12
451 113.53 humidity 80.0 90 < th dose dependent rect. 22 10
460 113.54 humidity 80.0 90 < th dose dependent rect. 23 8
467 113.55 humidity 80.0 90 < th dose independent rect. 1 6
503 113.57 humidity 80.0 10 < th dose dependent rect. 7 1
504 113.57 radiation 10.0 10 > th dose dependent rect. 7 1
570 113.60 wind 1.0 30 < th dose independent sin 22 NA
577 113.60 humidity 70.0 30 < th dose dependent rect. 18 14
583 113.61 humidity 70.0 30 < th dose independent rect. 18 14
586 113.62 humidity 80.0 90 < th dose independent rect. 6 1
605 113.63 humidity 70.0 10 < th dose independent rect. 7 1
776 113.65 humidity 90.0 90 > th dose dependent rect. 20 1
787 113.69 wind 1.0 30 < th dose dependent sin 22 NA