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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0514100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0105) R2 : 0.00562
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0354 (0.022) R2dN8 : 0.00725 R2N8 : 0.00562
σ : 0.197
deviance : 17.84
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.82 0.193 2.96 0.147 0.0718 -0.0886 -0.0787 -0.537 -0.0459 6.46 77.01 5868 -- --
17.13 0.193 2.96 0.0925 0.0753 -0.125 -0.092 -- -0.0787 6.17 81.66 7311 -- --
16.83 0.191 2.96 0.146 0.0733 -0.0828 -- -0.554 -0.0445 6.42 78.02 5927 -- --
17.15 0.193 2.96 0.0905 0.0754 -0.124 -- -- -0.0782 6.45 81.68 7310 -- --
17.09 0.193 2.96 0.15 -- -0.0904 -- -0.541 -0.045 -- 79.18 5869 -- --
17.4 0.196 2.95 0.0744 0.0732 -- -0.0821 -- -0.0288 6.39 -- -- -- --
17.41 0.195 2.95 0.0735 0.0728 -- -- -- -0.0285 6.58 -- -- -- --
17.43 0.194 2.97 0.0929 -- -0.127 -- -- -0.0767 -- 81.72 7147 -- --
17.36 0.194 2.96 -- 0.0757 -0.106 -- -- -0.0804 6.41 81.81 7311 -- --
17.69 0.197 2.95 0.0752 -- -- -- -- -0.027 -- -- -- -- --
17.56 0.196 2.95 -- 0.0738 -- -- -- -0.0367 6.52 -- -- -- --
17.65 0.196 2.97 -- -- -0.109 -- -- -0.0792 -- 81.67 7100 -- --
17.84 0.197 2.96 -- -- -- -- -- -0.0354 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.29 wind 1.0 30 < th dose independent rect. 2 1
2 14.31 wind 3.0 30 < th dose dependent rect. 2 1
7 14.36 temperature 25.0 30 < th dose independent rect. 2 1
8 14.36 humidity 80.0 30 > th dose independent rect. 2 1
9 14.36 temperature 10.0 30 > th dose dependent rect. 2 1
10 14.36 atmosphere 1005.0 30 > th dose dependent rect. 2 1
11 14.37 wind 9.0 30 < th dose independent rect. 2 1
12 14.37 temperature 10.0 30 > th dose independent rect. 2 1
15 14.37 humidity 50.0 30 > th dose independent rect. 2 1
18 14.37 atmosphere 995.0 30 > th dose independent rect. 2 1
19 14.37 atmosphere 1010.0 30 < th dose independent rect. 2 1
21 14.37 radiation 1.0 30 < th dose independent rect. 2 1
26 14.37 precipitation 0.1 30 < th dose independent rect. 2 1
27 14.37 temperature 10.0 30 > th dose independent rect. 3 23
29 14.37 humidity 50.0 30 > th dose dependent rect. 2 1
32 14.37 radiation 1.0 30 < th dose dependent rect. 2 1
37 14.37 precipitation 0.1 30 < th dose dependent rect. 2 1
41 14.38 atmosphere 1015.0 30 < th dose dependent rect. 2 1
43 14.40 atmosphere 995.0 30 > th dose dependent rect. 2 1
48 14.42 atmosphere 1005.0 30 > th dose independent rect. 2 1
51 14.47 temperature 30.0 30 < th dose dependent rect. 2 1
61 14.63 wind 9.0 30 < th dose independent rect. 3 23
71 14.73 wind 1.0 30 > th dose independent rect. 2 1
109 15.88 atmosphere 995.0 30 > th dose independent rect. 3 23
126 16.32 humidity 90.0 90 < th dose independent rect. 2 1
128 16.33 precipitation 0.1 30 < th dose independent rect. 3 23
129 16.33 precipitation 0.1 30 < th dose dependent rect. 3 23
198 16.62 wind 1.0 30 > th dose dependent rect. 2 1
216 16.67 wind 9.0 1440 < th dose independent rect. 3 1
217 16.67 temperature 10.0 1440 > th dose independent rect. 3 1
220 16.67 temperature 30.0 1440 < th dose independent rect. 3 1
224 16.67 humidity 50.0 1440 > th dose independent rect. 3 1
233 16.67 atmosphere 995.0 1440 > th dose independent rect. 3 1
234 16.67 radiation 1.0 1440 < th dose independent rect. 3 1
256 16.67 temperature 10.0 1440 > th dose independent rect. 4 23
259 16.67 radiation 1.0 1440 < th dose dependent rect. 3 1
313 16.72 humidity 70.0 1440 < th dose independent rect. 10 1
330 16.73 humidity 80.0 14400 < th dose dependent rect. 4 5
334 16.74 atmosphere 1015.0 30 < th dose independent rect. 3 23
339 16.75 atmosphere 1015.0 1440 < th dose independent rect. 3 1
358 16.75 atmosphere 995.0 720 > th dose independent rect. 23 16
376 16.76 humidity 70.0 1440 > th dose independent rect. 10 1
384 16.77 temperature 10.0 720 > th dose independent rect. 15 8
385 16.77 radiation 40.0 720 < th dose independent rect. 15 8
386 16.77 temperature 10.0 720 > th dose independent rect. 23 16
393 16.77 wind 9.0 30 < th dose dependent rect. 3 23
400 16.78 humidity 50.0 30 > th dose independent rect. 3 23
408 16.80 humidity 70.0 14400 > th dose independent rect. 8 1
426 16.80 temperature 10.0 720 > th dose independent rect. 3 8
427 16.80 atmosphere 995.0 720 > th dose independent rect. 3 8
428 16.80 temperature 10.0 720 > th dose independent rect. 11 16
443 16.80 temperature 10.0 30 > th dose dependent rect. 3 23
452 16.82 humidity 70.0 14400 < th dose independent rect. 8 1
454 16.82 wind 9.0 720 < th dose independent rect. 3 8
455 16.82 atmosphere 1015.0 720 < th dose independent rect. 3 8
459 16.82 wind 1.0 14400 < th dose dependent rect. 6 1
493 16.85 humidity 80.0 4320 < th dose independent rect. 3 8
500 16.85 humidity 50.0 4320 > th dose dependent rect. 3 6
521 16.86 precipitation 0.1 14400 > th dose independent rect. 1 8
522 16.86 precipitation 0.1 14400 < th dose independent rect. 1 8
534 16.86 radiation 10.0 30 < th dose independent rect. 4 22
546 16.86 precipitation 0.1 14400 < th dose dependent rect. 1 8
549 16.87 wind 5.0 14400 < th dose independent rect. 11 1
597 16.87 precipitation 0.1 14400 > th dose dependent rect. 1 8
611 16.88 atmosphere 1000.0 10 > th dose independent rect. 16 10
648 16.89 wind 1.0 14400 < th dose independent rect. 6 1
685 16.90 temperature 20.0 10 < th dose independent rect. 4 1
697 16.90 precipitation 0.1 720 < th dose independent rect. 15 8
723 16.90 precipitation 0.1 720 < th dose dependent rect. 15 8
763 16.91 wind 9.0 720 < th dose independent rect. 15 8
783 16.91 precipitation 0.1 14400 > th dose dependent rect. 5 2
785 16.91 wind 1.0 14400 < th dose dependent rect. 4 4
790 16.91 wind 1.0 14400 < th dose dependent rect. 4 7
826 16.92 wind 5.0 14400 > th dose independent rect. 11 1
860 16.92 wind 1.0 14400 < th dose independent rect. 4 4
864 16.92 wind 1.0 14400 < th dose independent rect. 4 7
885 16.92 humidity 50.0 4320 > th dose dependent sin 5 NA
887 16.92 humidity 90.0 4320 < th dose dependent sin 5 NA
889 16.92 temperature 25.0 4320 > th dose dependent rect. 6 1
891 16.92 humidity 60.0 14400 < th dose dependent rect. 12 1
896 16.92 temperature 25.0 1440 > th dose dependent rect. 3 5
947 16.92 humidity 50.0 30 > th dose dependent rect. 3 23
948 16.93 humidity 80.0 4320 < th dose independent sin 5 NA
953 16.93 precipitation 0.1 14400 > th dose independent rect. 5 2
954 16.93 precipitation 0.1 14400 < th dose independent rect. 5 2
960 16.93 wind 1.0 14400 > th dose independent rect. 4 4
966 16.93 wind 1.0 14400 > th dose independent rect. 4 7
967 16.93 humidity 50.0 720 > th dose independent rect. 3 8
969 16.93 precipitation 0.1 14400 > th dose independent rect. 4 8
970 16.93 precipitation 0.1 14400 < th dose independent rect. 4 8
973 16.93 atmosphere 1010.0 10 < th dose independent rect. 3 10
991 16.93 temperature 25.0 14400 > th dose dependent rect. 13 1
999 16.93 precipitation 0.1 14400 < th dose dependent rect. 5 2