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Os08g0513400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function CP12 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.47 (0.0227) R2 : 0.474
β1 : 1.33 (0.0833) R2dD : 0.305 R2D : 0.208
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.12 (0.087) R2dE : 0.193 R2E : 0.136
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.365 (0.0486) R2dN8 : 0.0879 R2N8 : -0.00173
σ : 0.425
deviance : 83.08
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 20.45
memory length : 167
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 19.1
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.82 0.387 9.48 1.42 0.78 1.6 -0.122 0.374 0.337 15.2 1.83 309 19.9 --
67.73 0.383 9.48 1.41 0.82 1.63 -0.28 -- 0.339 15.6 2.001 314 20.2 --
67.74 0.383 9.48 1.42 0.794 1.59 -- 0.429 0.343 15.3 1.768 317 20 --
67.93 0.384 9.48 1.41 0.819 1.64 -- -- 0.339 15.6 1.95 317 20.2 --
83.39 0.425 9.45 1.4 -- 1.09 -- -0.737 0.387 -- 16.12 193 19.1 --
101.27 0.472 9.47 1.28 0.441 -- -0.118 -- 0.32 10.5 -- -- -- --
101.32 0.471 9.47 1.27 0.443 -- -- -- 0.32 10.4 -- -- -- --
83.08 0.425 9.47 1.33 -- 1.12 -- -- 0.365 -- 20.45 167 19.1 --
116.92 0.504 9.51 -- 0.536 1.31 -- -- 0.204 14.9 9.755 200 20.2 --
113.29 0.497 9.48 1.26 -- -- -- -- 0.318 -- -- -- -- --
143.84 0.561 9.5 -- 0.436 -- -- -- 0.178 10.2 -- -- -- --
127.93 0.527 9.51 -- -- 1.04 -- -- 0.198 -- 10.02 200 19.3 --
155.36 0.582 9.51 -- -- -- -- -- 0.178 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 60.28 precipitation 0.1 90 < th dose independent rect. 20 8
2 60.28 precipitation 0.1 90 < th dose dependent rect. 20 8
3 60.60 temperature 15.0 270 > th dose independent rect. 15 16
4 60.83 wind 9.0 90 < th dose independent rect. 20 8
5 60.92 temperature 10.0 90 > th dose independent rect. 20 8
6 60.92 temperature 30.0 90 < th dose independent rect. 20 8
7 60.92 humidity 50.0 90 > th dose independent rect. 20 8
10 60.92 atmosphere 995.0 90 > th dose independent rect. 20 8
11 60.92 radiation 1.0 90 < th dose independent rect. 20 8
16 60.92 temperature 10.0 90 > th dose independent rect. 4 16
17 60.92 atmosphere 1015.0 90 < th dose independent rect. 4 16
18 60.92 radiation 1.0 90 < th dose dependent rect. 20 8
23 60.98 wind 9.0 90 < th dose independent rect. 4 16
27 61.18 radiation 20.0 90 < th dose dependent rect. 4 16
29 61.55 precipitation 0.1 90 < th dose independent rect. 4 16
30 61.55 precipitation 0.1 90 < th dose dependent rect. 4 16
51 61.78 temperature 10.0 1440 > th dose independent rect. 22 7
54 61.78 temperature 30.0 1440 < th dose independent rect. 22 7
58 61.78 humidity 50.0 1440 > th dose independent rect. 22 7
65 61.78 atmosphere 995.0 1440 > th dose independent rect. 22 7
66 61.78 radiation 20.0 1440 < th dose independent rect. 22 7
78 61.78 temperature 10.0 1440 > th dose independent rect. 5 17
111 62.12 radiation 10.0 270 < th dose independent rect. 3 3
112 62.21 precipitation 0.1 270 < th dose independent rect. 6 9
113 62.21 precipitation 0.1 270 < th dose dependent rect. 6 9
115 62.24 radiation 10.0 270 < th dose dependent rect. 3 4
116 62.28 temperature 10.0 270 > th dose independent rect. 6 9
117 62.28 atmosphere 1015.0 270 < th dose independent rect. 6 9
119 62.34 radiation 1.0 270 > th dose independent rect. 7 8
121 62.52 atmosphere 995.0 270 > th dose independent rect. 6 9
126 62.55 radiation 20.0 270 < th dose independent rect. 2 5
128 62.56 temperature 10.0 270 > th dose dependent rect. 3 3
130 62.60 radiation 40.0 270 < th dose dependent rect. 2 5
132 62.62 precipitation 0.1 270 < th dose independent rect. 7 19
134 62.62 precipitation 0.1 270 < th dose dependent rect. 7 19
137 62.65 humidity 70.0 270 > th dose independent rect. 2 5
141 62.69 precipitation 0.1 270 < th dose independent rect. 6 21
142 62.69 precipitation 0.1 270 < th dose dependent rect. 6 21
143 62.72 wind 7.0 270 < th dose independent rect. 3 3
161 62.78 atmosphere 1010.0 270 < th dose independent rect. 3 3
162 62.78 wind 7.0 270 < th dose independent rect. 2 5
166 62.82 temperature 10.0 270 > th dose independent rect. 3 3
168 62.82 temperature 30.0 270 < th dose independent rect. 3 3
169 62.82 humidity 50.0 270 > th dose independent rect. 3 3
172 62.82 atmosphere 995.0 270 > th dose independent rect. 3 3
177 62.82 temperature 10.0 270 > th dose independent rect. 6 21
183 62.87 temperature 10.0 270 > th dose independent rect. 2 5
185 62.87 temperature 30.0 270 < th dose independent rect. 2 5
186 62.87 humidity 50.0 270 > th dose independent rect. 2 5
188 62.87 atmosphere 995.0 270 > th dose independent rect. 2 5
189 62.87 atmosphere 1015.0 270 < th dose independent rect. 2 5
191 62.87 temperature 10.0 270 > th dose independent rect. 7 19
196 62.98 radiation 40.0 270 < th dose independent rect. 15 15
202 63.14 atmosphere 995.0 90 > th dose independent rect. 4 16
203 63.19 atmosphere 1015.0 90 < th dose independent rect. 21 7
204 63.21 humidity 70.0 270 > th dose independent rect. 1 7
206 63.27 wind 9.0 270 < th dose independent rect. 7 19
208 63.29 radiation 20.0 270 < th dose independent rect. 1 7
211 63.33 temperature 10.0 270 > th dose dependent rect. 2 5
212 63.35 precipitation 0.1 270 < th dose independent rect. 2 5
213 63.35 precipitation 0.1 270 < th dose dependent rect. 2 5
214 63.40 wind 9.0 270 < th dose independent rect. 6 21
215 63.45 precipitation 0.1 270 < th dose independent rect. 3 3
216 63.45 precipitation 0.1 270 < th dose dependent rect. 3 3
222 63.49 wind 9.0 270 < th dose independent rect. 6 9
228 63.59 radiation 40.0 270 < th dose dependent rect. 15 16
230 63.63 wind 9.0 270 < th dose independent rect. 15 15
237 63.70 precipitation 0.1 270 < th dose independent rect. 8 17
239 63.70 precipitation 0.1 270 < th dose dependent rect. 8 17
242 63.75 humidity 50.0 270 > th dose dependent rect. 2 5
260 63.79 radiation 10.0 90 < th dose independent rect. 4 16
261 63.79 humidity 50.0 270 > th dose dependent rect. 3 3
265 63.82 wind 7.0 270 < th dose independent rect. 1 7
271 63.92 temperature 10.0 270 > th dose independent rect. 1 7
273 63.92 temperature 30.0 270 < th dose independent rect. 1 7
274 63.92 humidity 50.0 270 > th dose independent rect. 1 7
276 63.92 atmosphere 995.0 270 > th dose independent rect. 1 7
277 63.92 atmosphere 1015.0 270 < th dose independent rect. 1 7
278 63.92 temperature 10.0 270 > th dose independent rect. 8 17
281 63.99 humidity 50.0 90 > th dose dependent rect. 20 8
309 64.23 precipitation 0.1 270 < th dose independent rect. 15 15
310 64.23 precipitation 0.1 270 < th dose dependent rect. 15 15
325 64.40 wind 9.0 270 < th dose independent rect. 8 17
326 64.40 wind 9.0 270 < th dose dependent rect. 2 5
330 64.47 precipitation 0.1 270 < th dose independent rect. 1 7
331 64.47 precipitation 0.1 270 < th dose dependent rect. 1 7
332 64.49 humidity 50.0 90 > th dose dependent rect. 4 5
338 64.55 wind 9.0 270 < th dose dependent rect. 3 3
366 64.79 wind 1.0 270 > th dose independent rect. 19 8
368 64.81 wind 1.0 270 > th dose independent rect. 8 17
373 64.89 wind 1.0 270 > th dose independent rect. 7 19
382 64.98 humidity 50.0 270 > th dose independent rect. 6 9
384 64.99 atmosphere 995.0 270 > th dose independent rect. 7 19
385 65.02 atmosphere 995.0 270 > th dose independent rect. 15 15
405 65.13 temperature 10.0 90 > th dose dependent rect. 21 7
409 65.16 atmosphere 1015.0 270 < th dose independent rect. 7 19
435 65.37 wind 9.0 90 < th dose dependent rect. 20 8
443 65.46 wind 1.0 270 > th dose independent rect. 7 8
458 65.64 atmosphere 1015.0 270 < th dose independent rect. 8 17
476 65.74 wind 1.0 270 > th dose independent rect. 3 3
478 65.74 temperature 15.0 270 > th dose independent rect. 13 8
503 65.80 radiation 40.0 1440 < th dose dependent rect. 22 7
514 65.91 atmosphere 995.0 270 > th dose independent rect. 2 17
528 65.98 atmosphere 995.0 270 > th dose independent rect. 8 17
547 66.12 temperature 10.0 1440 > th dose independent rect. 5 5
550 66.12 atmosphere 995.0 1440 > th dose independent rect. 5 5
551 66.12 atmosphere 1015.0 1440 < th dose independent rect. 5 5
553 66.12 temperature 10.0 1440 > th dose independent rect. 10 19
566 66.21 atmosphere 995.0 270 > th dose independent rect. 6 21
666 66.64 wind 7.0 270 < th dose independent rect. 4 1
681 66.71 temperature 10.0 270 > th dose independent rect. 4 1
683 66.71 temperature 30.0 270 < th dose independent rect. 4 1
684 66.71 humidity 50.0 270 > th dose independent rect. 4 1
687 66.71 atmosphere 995.0 270 > th dose independent rect. 4 1
693 66.71 temperature 10.0 270 > th dose independent rect. 5 23
714 66.80 humidity 50.0 90 > th dose independent rect. 4 16
794 67.03 humidity 50.0 270 > th dose independent rect. 2 17
810 67.13 precipitation 0.1 270 < th dose independent rect. 20 17
814 67.13 precipitation 0.1 270 < th dose dependent rect. 20 17
828 67.23 wind 1.0 270 > th dose independent rect. 2 5
869 67.55 atmosphere 1010.0 270 < th dose independent rect. 13 7
874 67.56 temperature 10.0 270 > th dose independent rect. 20 17
875 67.56 atmosphere 995.0 270 > th dose independent rect. 20 17
888 67.59 humidity 50.0 90 > th dose dependent rect. 4 16
910 67.74 humidity 50.0 270 > th dose independent rect. 15 16
940 67.82 atmosphere 1015.0 270 < th dose independent rect. 6 21
943 67.84 wind 9.0 1440 < th dose independent rect. 5 4
947 67.84 humidity 50.0 1440 > th dose independent rect. 5 4
979 68.00 wind 9.0 270 < th dose independent rect. 20 17
981 68.01 wind 9.0 270 < th dose independent rect. 13 7