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Os08g0513100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.85 (0.0223) R2 : 0.535
β1 : 1.36 (0.0818) R2dD : 0.295 R2D : 0.273
β2 : 0.808 (0.053) R2dC : 0.238 R2C : 0.244
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.202 (0.0477) R2dN8 : 0.0245 R2N8 : -0.00803
σ : 0.42
deviance : 80.36
__
_____
C
peak time of C : 0.403
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
68.44 0.389 8.79 1.17 0.796 0.165 -0.21 2.54 0.233 0.34 2.027e-08 4443 -- --
70.61 0.391 8.83 1.19 0.77 0.578 -0.212 -- 0.263 0.553 0.4302 12492 -- --
68.62 0.386 8.79 1.17 0.795 0.165 -- 2.53 0.234 0.353 -0.0004549 4443 -- --
70.62 0.391 8.83 1.17 0.786 0.573 -- -- 0.284 0.387 0.4301 12492 -- --
108.02 0.484 8.77 1.19 -- 0.139 -- 2.75 0.243 -- -0.1708 4837 -- --
80.28 0.42 8.85 1.36 0.808 -- -0.133 -- 0.201 0.386 -- -- -- --
80.36 0.42 8.85 1.36 0.808 -- -- -- 0.202 0.403 -- -- -- --
110.93 0.491 8.81 0.986 -- 0.689 -- -- 0.283 -- 0.9013 22438 -- --
81.61 0.421 8.83 -- 0.84 0.923 -- -- 0.268 0.618 1 47220 -- --
121.41 0.515 8.83 1.39 -- -- -- -- 0.215 -- -- -- -- --
129.39 0.532 8.88 -- 0.828 -- -- -- 0.0498 0.488 -- -- -- --
125.51 0.522 8.81 -- -- 0.897 -- -- 0.284 -- 1.393 47520 -- --
172.48 0.613 8.87 -- -- -- -- -- 0.0605 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 65.18 humidity 70.0 1440 > th dose independent rect. 17 1
4 65.94 humidity 70.0 1440 < th dose independent rect. 16 2
5 66.06 humidity 70.0 1440 > th dose independent rect. 16 17
8 66.74 temperature 30.0 270 < th dose independent rect. 3 16
9 66.76 temperature 10.0 270 > th dose dependent rect. 7 8
15 66.96 radiation 1.0 43200 < th dose dependent rect. 24 1
20 67.16 radiation 10.0 270 > th dose independent rect. 17 22
21 67.16 radiation 20.0 30 < th dose dependent rect. 6 17
27 67.53 radiation 10.0 270 > th dose independent rect. 6 9
44 67.61 radiation 1.0 43200 < th dose dependent rect. 24 3
45 67.63 precipitation 0.1 4320 > th dose dependent rect. 20 23
46 67.65 temperature 25.0 270 > th dose dependent rect. 19 20
50 67.75 humidity 80.0 270 < th dose independent rect. 8 7
51 67.76 radiation 10.0 270 > th dose independent sin 2 NA
64 67.87 humidity 70.0 1440 > th dose independent rect. 16 10
67 67.88 humidity 70.0 1440 > th dose independent rect. 16 12
72 67.92 precipitation 0.1 4320 > th dose independent rect. 4 14
75 67.93 precipitation 0.1 4320 > th dose independent rect. 13 5
76 67.95 precipitation 0.1 4320 < th dose independent rect. 13 5
77 67.95 precipitation 0.1 4320 < th dose dependent rect. 13 5
92 67.97 temperature 25.0 270 > th dose dependent sin 5 NA
94 67.99 precipitation 0.1 4320 < th dose independent sin 23 NA
95 67.99 humidity 70.0 1440 < th dose independent rect. 16 17
96 67.99 precipitation 0.1 4320 < th dose dependent sin 23 NA
97 68.00 precipitation 0.1 4320 > th dose independent sin 23 NA
98 68.00 precipitation 0.1 4320 < th dose independent rect. 4 14
100 68.00 precipitation 0.1 4320 > th dose independent rect. 21 21
101 68.00 precipitation 0.1 4320 < th dose independent rect. 21 21
102 68.00 precipitation 0.1 4320 < th dose dependent rect. 4 14
103 68.00 precipitation 0.1 4320 < th dose dependent rect. 21 21
110 68.05 temperature 25.0 10 > th dose dependent rect. 8 10
116 68.07 temperature 25.0 270 > th dose dependent rect. 1 14
121 68.08 precipitation 0.1 4320 > th dose dependent rect. 5 22
123 68.10 precipitation 0.1 4320 > th dose dependent sin 1 NA
125 68.10 temperature 25.0 270 > th dose dependent rect. 7 8
130 68.12 humidity 70.0 1440 > th dose independent sin 11 NA
136 68.13 radiation 20.0 90 < th dose dependent rect. 6 15
148 68.17 humidity 70.0 90 > th dose independent rect. 5 15
150 68.17 precipitation 0.1 4320 < th dose independent rect. 20 23
154 68.17 precipitation 0.1 4320 < th dose dependent rect. 20 23
156 68.18 precipitation 0.1 4320 > th dose independent rect. 20 23
164 68.20 radiation 10.0 90 < th dose dependent sin 22 NA
165 68.20 precipitation 0.1 4320 > th dose dependent rect. 9 18
168 68.22 humidity 70.0 270 > th dose independent rect. 2 17
182 68.26 radiation 20.0 270 < th dose dependent rect. 3 16
194 68.30 precipitation 0.1 4320 < th dose independent rect. 4 23
197 68.30 precipitation 0.1 4320 < th dose dependent rect. 4 23
199 68.31 precipitation 0.1 4320 > th dose independent rect. 4 23
204 68.32 precipitation 0.1 4320 < th dose independent rect. 6 21
209 68.32 precipitation 0.1 4320 < th dose dependent rect. 6 21
213 68.33 precipitation 0.1 4320 < th dose independent rect. 9 9
216 68.33 precipitation 0.1 4320 < th dose dependent rect. 9 9
222 68.35 precipitation 0.1 4320 > th dose dependent rect. 12 15
229 68.37 precipitation 0.1 4320 > th dose independent rect. 9 9
237 68.41 temperature 25.0 90 > th dose dependent sin 1 NA
243 68.42 temperature 30.0 90 < th dose independent rect. 5 16
260 68.46 precipitation 0.1 14400 > th dose independent rect. 6 17
264 68.47 precipitation 0.1 14400 < th dose independent rect. 6 17
265 68.47 precipitation 0.1 4320 < th dose independent rect. 9 18
268 68.47 precipitation 0.1 14400 < th dose dependent rect. 6 17
269 68.47 precipitation 0.1 4320 < th dose dependent rect. 9 18
275 68.48 precipitation 0.1 4320 > th dose dependent rect. 4 20
278 68.49 precipitation 0.1 4320 > th dose dependent rect. 2 16
301 68.52 precipitation 0.1 14400 < th dose independent rect. 8 15
303 68.52 precipitation 0.1 14400 < th dose dependent rect. 8 15
307 68.53 precipitation 0.1 14400 > th dose independent rect. 8 15
309 68.53 precipitation 0.1 4320 > th dose independent rect. 9 18
314 68.54 precipitation 0.1 4320 > th dose dependent rect. 2 22
318 68.55 radiation 10.0 90 < th dose independent rect. 6 15
327 68.56 temperature 15.0 10 > th dose dependent rect. 8 10
341 68.58 precipitation 0.1 4320 > th dose dependent rect. 9 22
347 68.59 precipitation 0.1 4320 > th dose dependent rect. 12 23
364 68.61 precipitation 0.1 4320 > th dose dependent no NA NA
371 68.62 radiation 1.0 30 > th dose independent rect. 8 11
383 68.62 precipitation 0.1 4320 > th dose independent rect. 4 20
386 68.62 precipitation 0.1 4320 > th dose dependent rect. 9 15
392 68.63 precipitation 0.1 4320 < th dose independent rect. 4 20
396 68.63 precipitation 0.1 4320 < th dose dependent rect. 4 20
407 68.65 radiation 1.0 43200 < th dose dependent rect. 22 3
440 68.67 precipitation 0.1 4320 > th dose independent rect. 2 21
441 68.67 precipitation 0.1 4320 < th dose independent rect. 2 21
451 68.67 precipitation 0.1 4320 < th dose dependent rect. 2 21
464 68.68 precipitation 0.1 4320 > th dose dependent rect. 12 19
467 68.68 precipitation 0.1 4320 > th dose dependent rect. 17 23
472 68.69 radiation 10.0 10 < th dose independent rect. 6 17
554 68.74 precipitation 0.1 4320 > th dose dependent rect. 12 12
559 68.74 precipitation 0.1 4320 > th dose dependent rect. 15 23
565 68.75 precipitation 0.1 4320 > th dose independent rect. 12 15
615 68.78 precipitation 0.1 4320 > th dose independent rect. 23 23
648 68.79 radiation 1.0 43200 < th dose dependent rect. 22 5
687 68.81 precipitation 0.1 4320 < th dose independent rect. 9 22
690 68.81 radiation 10.0 270 < th dose dependent rect. 9 10
699 68.81 precipitation 0.1 4320 < th dose dependent rect. 9 22
704 68.82 precipitation 0.1 4320 > th dose independent rect. 9 22
706 68.82 precipitation 0.1 4320 > th dose independent rect. 12 23
709 68.82 precipitation 0.1 4320 < th dose independent rect. 12 23
720 68.82 precipitation 0.1 4320 < th dose dependent rect. 12 23
756 68.85 precipitation 0.1 4320 > th dose independent no NA NA
757 68.85 precipitation 0.1 4320 < th dose independent no NA NA
761 68.85 temperature 25.0 30 > th dose independent rect. 18 14
775 68.85 temperature 25.0 10 > th dose dependent sin 23 NA
776 68.85 precipitation 0.1 4320 < th dose dependent no NA NA
786 68.86 precipitation 0.1 14400 > th dose independent rect. 17 6
813 68.88 precipitation 0.1 14400 < th dose independent rect. 17 6
819 68.88 humidity 70.0 90 > th dose independent rect. 24 23
823 68.88 precipitation 0.1 14400 < th dose dependent rect. 17 6
863 68.90 radiation 20.0 90 < th dose dependent rect. 11 23
883 68.91 radiation 20.0 90 < th dose dependent rect. 15 19
908 68.92 radiation 20.0 90 < th dose dependent rect. 13 21
927 68.94 precipitation 0.1 4320 > th dose independent rect. 12 19
929 68.94 precipitation 0.1 4320 < th dose independent rect. 12 19
940 68.94 precipitation 0.1 4320 < th dose dependent rect. 12 19
948 68.95 humidity 70.0 10 > th dose dependent rect. 6 15
979 68.97 radiation 20.0 270 < th dose dependent rect. 21 23