Os08g0512600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein cdc2 kinase.
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Os08g0512600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein cdc2 kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 357.76 | 0.889 | 5.98 | -2.42 | 0.502 | 1.84 | 3.42 | -7.14 | -0.423 | 21.4 | 25.68 | 1881 | -- | -- |
| 364.55 | 0.889 | 5.82 | -0.851 | 0.63 | 0.997 | 3.35 | -- | -0.173 | 21 | 25.5 | 6849 | -- | -- |
| 397.83 | 0.929 | 5.94 | -2.3 | 0.49 | 1.9 | -- | -6.67 | -0.279 | 22.5 | 26.6 | 1909 | -- | -- |
| 403.54 | 0.936 | 5.82 | -0.982 | 0.612 | 1.03 | -- | -- | -0.178 | 21 | 25.5 | 6821 | -- | -- |
| 410.35 | 0.943 | 5.93 | -2.33 | -- | 2.03 | -- | -6.58 | -0.292 | -- | 26.5 | 2100 | -- | -- |
| 408.11 | 0.947 | 5.77 | -0.455 | 0.689 | -- | 3.38 | -- | 0.0514 | 21.3 | -- | -- | -- | -- |
| 449.08 | 0.992 | 5.77 | -0.579 | 0.674 | -- | -- | -- | 0.0465 | 21.5 | -- | -- | -- | -- |
| 418.69 | 0.953 | 5.77 | -0.949 | -- | 1.34 | -- | -- | -0.0143 | -- | 26.3 | 2142 | -- | -- |
| 425.96 | 0.961 | 5.78 | -- | 0.633 | 0.803 | -- | -- | -0.0125 | 21 | 26.64 | 6852 | -- | -- |
| 475.82 | 1.02 | 5.75 | -0.574 | -- | -- | -- | -- | 0.0447 | -- | -- | -- | -- | -- |
| 457.9 | 1 | 5.76 | -- | 0.673 | -- | -- | -- | 0.111 | 21.5 | -- | -- | -- | -- |
| 440.96 | 0.978 | 5.73 | -- | -- | 1.15 | -- | -- | 0.117 | -- | 26.51 | 2145 | -- | -- |
| 484.5 | 1.03 | 5.74 | -- | -- | -- | -- | -- | 0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 334.06 | wind | 3.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 2 | 334.07 | wind | 3.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 3 | 334.67 | wind | 3.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 4 | 335.19 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 5 | 336.24 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 18 | 16 |
| 6 | 336.49 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 7 | 336.77 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 21 | 336.99 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 35 | 337.01 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 37 | 337.05 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 16 | 18 |
| 39 | 337.11 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 16 | 18 |
| 41 | 337.35 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 42 | 337.36 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 47 | 337.42 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 52 | 337.45 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 63 | 337.64 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 72 | 337.89 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 74 | 337.89 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 16 | 13 |
| 92 | 337.94 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 122 | 338.04 | temperature | 30.0 | 43200 | > th | dose dependent | sin | 10 | NA |
| 123 | 338.05 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 139 | 338.11 | temperature | 30.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 143 | 338.14 | temperature | 30.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 172 | 338.33 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 12 | 23 |
| 174 | 338.34 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 16 | 22 |
| 203 | 338.47 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 212 | 338.52 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 12 | 7 |
| 227 | 338.55 | temperature | 30.0 | 43200 | > th | dose dependent | no | NA | NA |
| 228 | 338.55 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 8 | 11 |
| 320 | 338.57 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 414 | 338.68 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 15 | 4 |
| 433 | 338.71 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 440 | 338.73 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 505 | 338.79 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 8 | 6 |
| 607 | 339.07 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 632 | 339.18 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 656 | 339.27 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 714 | 339.71 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 727 | 339.85 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 14 |
| 797 | 340.24 | wind | 3.0 | 43200 | > th | dose independent | rect. | 21 | 18 |
| 870 | 340.75 | wind | 3.0 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 881 | 340.83 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 899 | 340.88 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 14 |
| 930 | 341.20 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 939 | 341.21 | temperature | 30.0 | 43200 | > th | dose independent | no | NA | NA |
| 941 | 341.21 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 8 | 11 |