FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0511200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to CUC2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.14 (0.0275) R2 : 0.00183
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0529 (0.0579) R2dN8 : 0.00236 R2N8 : 0.00183
σ : 0.518
deviance : 123.23
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.82 0.497 3.16 -0.378 0.277 0.381 -0.0979 -0.971 -0.258 11.3 89.78 4608 -- --
113.05 0.495 3.18 -0.231 0.296 0.405 -0.0799 -- -0.244 11.1 89.28 4812 -- --
111.86 0.493 3.16 -0.382 0.278 0.38 -- -0.97 -0.258 11.2 89.81 4606 -- --
113.07 0.495 3.17 -0.234 0.296 0.411 -- -- -0.245 11 89.29 4813 -- --
116.59 0.503 3.17 -0.381 -- 0.41 -- -0.952 -0.27 -- 89.74 4526 -- --
115.7 0.504 3.14 -0.302 0.278 -- -0.0953 -- -0.0839 11.7 -- -- -- --
115.74 0.504 3.14 -0.306 0.279 -- -- -- -0.0844 11.6 -- -- -- --
117.74 0.505 3.18 -0.24 -- 0.441 -- -- -0.251 -- 89.4 4446 -- --
114.41 0.498 3.17 -- 0.294 0.466 -- -- -0.233 11 90.09 4783 -- --
120.63 0.513 3.15 -0.314 -- -- -- -- -0.0877 -- -- -- -- --
118.21 0.509 3.13 -- 0.282 -- -- -- -0.0504 11.7 -- -- -- --
119.14 0.508 3.18 -- -- 0.503 -- -- -0.246 -- 90.57 4535 -- --
123.23 0.518 3.14 -- -- -- -- -- -0.0529 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 109.87 humidity 70.0 10 < th dose dependent rect. 10 1
2 110.62 temperature 30.0 270 > th dose independent rect. 13 1
3 110.65 temperature 30.0 270 > th dose independent rect. 11 3
4 110.67 temperature 30.0 10 < th dose independent rect. 10 1
6 110.74 temperature 20.0 10 > th dose independent rect. 10 1
7 110.80 atmosphere 1010.0 10 < th dose independent rect. 10 1
8 110.84 humidity 60.0 270 < th dose independent rect. 8 1
34 110.84 humidity 60.0 270 < th dose dependent rect. 8 1
60 110.91 humidity 60.0 720 > th dose independent rect. 2 7
61 110.91 wind 9.0 720 < th dose independent rect. 1 23
62 110.92 temperature 30.0 270 > th dose independent rect. 18 20
79 110.95 humidity 70.0 10 < th dose independent rect. 10 1
80 110.95 atmosphere 1005.0 10 > th dose independent rect. 10 1
81 111.03 radiation 40.0 30 > th dose dependent rect. 10 1
82 111.04 atmosphere 1005.0 90 > th dose independent rect. 10 2
84 111.09 radiation 1.0 4320 > th dose independent rect. 18 11
85 111.09 wind 7.0 720 < th dose independent rect. 21 17
86 111.09 atmosphere 1000.0 30 > th dose dependent rect. 11 1
88 111.10 wind 9.0 720 < th dose dependent rect. 12 1
92 111.13 temperature 20.0 720 > th dose dependent rect. 6 4
96 111.18 temperature 15.0 4320 > th dose independent rect. 11 2
98 111.19 wind 1.0 10 > th dose independent rect. 10 1
99 111.19 temperature 10.0 10 > th dose independent rect. 10 1
101 111.19 humidity 50.0 10 > th dose independent rect. 10 1
102 111.19 humidity 90.0 10 < th dose independent rect. 10 1
103 111.19 atmosphere 995.0 10 > th dose independent rect. 10 1
105 111.19 radiation 1.0 10 > th dose independent rect. 10 1
106 111.19 precipitation 0.1 10 < th dose independent rect. 10 1
107 111.19 temperature 10.0 10 > th dose independent rect. 11 23
108 111.19 precipitation 0.1 10 < th dose dependent rect. 10 1
109 111.19 temperature 10.0 30 > th dose dependent rect. 9 21
114 111.27 wind 1.0 30 > th dose dependent rect. 10 1
115 111.28 wind 9.0 10 < th dose independent rect. 10 1
116 111.28 humidity 90.0 4320 < th dose independent rect. 2 1
118 111.28 wind 9.0 720 < th dose independent rect. 2 15
119 111.29 humidity 60.0 1440 > th dose independent rect. 7 2
120 111.30 radiation 1.0 4320 > th dose independent rect. 18 1
131 111.30 temperature 10.0 10 > th dose dependent rect. 10 1
134 111.34 temperature 20.0 1440 > th dose independent rect. 6 2
137 111.35 radiation 1.0 10 > th dose dependent rect. 10 1
139 111.38 radiation 20.0 14400 < th dose independent rect. 17 8
157 111.40 temperature 20.0 30 < th dose independent rect. 7 11
159 111.41 temperature 20.0 1440 < th dose independent rect. 5 3
164 111.44 wind 5.0 720 < th dose independent rect. 12 1
165 111.44 humidity 90.0 4320 < th dose independent rect. 1 3
184 111.47 wind 7.0 30 < th dose independent rect. 12 13
186 111.47 temperature 10.0 720 > th dose dependent rect. 3 7
189 111.48 humidity 50.0 10 > th dose independent rect. 9 21
192 111.49 humidity 90.0 4320 < th dose independent rect. 22 6
195 111.49 wind 5.0 90 < th dose independent rect. 12 21
197 111.51 wind 9.0 10 < th dose dependent rect. 10 1
198 111.51 temperature 20.0 720 > th dose dependent rect. 9 1
202 111.52 atmosphere 1010.0 90 < th dose independent rect. 9 2
208 111.53 temperature 20.0 1440 > th dose independent rect. 5 6
210 111.54 wind 5.0 10 < th dose independent rect. 12 21
224 111.56 radiation 1.0 30 > th dose independent rect. 9 21
228 111.57 humidity 90.0 14400 < th dose independent rect. 22 3
231 111.58 humidity 90.0 14400 < th dose independent rect. 23 1
236 111.60 wind 5.0 10 < th dose independent rect. 10 1
247 111.61 radiation 20.0 14400 < th dose independent rect. 17 4
250 111.62 radiation 10.0 43200 > th dose independent rect. 17 1
260 111.62 temperature 20.0 30 < th dose independent rect. 7 9
264 111.62 humidity 60.0 1440 > th dose independent rect. 22 11
268 111.63 humidity 90.0 14400 > th dose independent rect. 22 4
273 111.64 radiation 40.0 14400 < th dose independent rect. 16 1
283 111.66 temperature 15.0 90 > th dose dependent rect. 13 22
296 111.69 humidity 60.0 1440 > th dose independent rect. 20 13
297 111.70 humidity 60.0 43200 > th dose independent rect. 8 1
305 111.71 temperature 20.0 30 < th dose independent rect. 7 7
309 111.71 humidity 90.0 4320 < th dose independent rect. 21 15
312 111.72 wind 1.0 43200 < th dose independent rect. 2 1
313 111.72 humidity 90.0 4320 > th dose independent rect. 22 6
320 111.73 radiation 1.0 4320 < th dose independent rect. 18 12
346 111.75 atmosphere 1015.0 30 < th dose dependent rect. 10 1
350 111.76 humidity 50.0 43200 > th dose independent rect. 11 1
358 111.76 humidity 90.0 4320 < th dose independent rect. 21 18
368 111.78 humidity 60.0 43200 < th dose independent rect. 8 1
369 111.78 humidity 50.0 43200 < th dose independent rect. 11 1
387 111.80 wind 7.0 720 < th dose independent rect. 2 7
394 111.80 temperature 10.0 720 > th dose dependent rect. 22 16
398 111.81 radiation 20.0 14400 < th dose independent rect. 17 12
403 111.81 humidity 80.0 14400 > th dose dependent rect. 22 4
405 111.82 temperature 20.0 43200 < th dose independent rect. 16 1
412 111.82 wind 7.0 90 < th dose independent rect. 11 23
416 111.83 humidity 90.0 4320 > th dose independent rect. 22 14
421 111.84 wind 9.0 43200 < th dose independent rect. 2 1
425 111.84 wind 9.0 720 < th dose independent rect. 5 9
430 111.84 wind 1.0 43200 < th dose dependent rect. 2 1
431 111.84 humidity 50.0 30 > th dose dependent rect. 10 1
433 111.85 temperature 20.0 43200 > th dose independent rect. 16 1
439 111.85 temperature 20.0 90 < th dose independent rect. 7 4
443 111.85 radiation 40.0 43200 < th dose independent rect. 16 9
446 111.85 humidity 90.0 4320 < th dose independent rect. 17 19
449 111.85 humidity 90.0 4320 < th dose independent rect. 5 23
451 111.86 humidity 90.0 4320 < th dose independent sin 9 NA
465 111.86 humidity 90.0 4320 > th dose independent rect. 22 19
468 111.86 humidity 90.0 4320 < th dose independent rect. 14 22
470 111.86 wind 9.0 30 < th dose dependent rect. 11 22
480 111.87 humidity 90.0 4320 > th dose independent rect. 22 17
488 111.87 humidity 90.0 4320 < th dose independent rect. 18 21
501 111.88 humidity 90.0 4320 < th dose independent rect. 13 17
505 111.88 wind 7.0 30 < th dose independent rect. 15 23
507 111.88 temperature 20.0 30 > th dose dependent rect. 9 9
533 111.89 humidity 90.0 4320 < th dose independent rect. 10 22
539 111.90 atmosphere 1010.0 720 < th dose independent rect. 9 1
555 111.90 humidity 90.0 4320 < th dose independent rect. 10 20
569 111.90 temperature 30.0 90 < th dose dependent rect. 11 21
573 111.91 radiation 30.0 10 < th dose independent rect. 10 1
591 111.91 humidity 90.0 4320 < th dose independent rect. 7 23
597 111.91 humidity 60.0 10 < th dose dependent rect. 12 1
603 111.92 wind 1.0 14400 > th dose independent rect. 23 2
612 111.92 humidity 90.0 4320 < th dose independent rect. 14 14
621 111.92 wind 7.0 270 > th dose dependent rect. 8 1
623 111.93 humidity 90.0 4320 < th dose independent no NA NA
637 111.93 humidity 50.0 10 > th dose independent rect. 7 23
638 111.93 humidity 90.0 4320 < th dose independent rect. 1 23
647 111.94 radiation 40.0 43200 < th dose independent rect. 7 1
698 111.96 temperature 20.0 43200 < th dose independent rect. 11 8
703 111.96 humidity 90.0 4320 < th dose independent rect. 17 11
716 111.96 humidity 90.0 4320 > th dose independent rect. 5 23
723 111.97 wind 7.0 10 > th dose independent rect. 9 2
724 111.97 humidity 90.0 4320 > th dose independent rect. 1 2
733 111.97 temperature 20.0 43200 > th dose independent rect. 11 8
760 111.98 radiation 20.0 720 < th dose independent rect. 23 11
765 111.98 humidity 90.0 4320 > th dose independent rect. 13 17
766 111.98 temperature 20.0 30 > th dose independent rect. 9 21
767 111.98 humidity 90.0 4320 > th dose independent rect. 14 22
788 111.99 radiation 40.0 43200 < th dose independent rect. 19 13
794 111.99 humidity 90.0 4320 > th dose independent rect. 10 20
818 112.00 humidity 90.0 14400 > th dose independent rect. 22 10
822 112.00 humidity 90.0 4320 > th dose independent rect. 13 19
823 112.00 humidity 90.0 4320 > th dose independent rect. 16 20
831 112.00 radiation 40.0 30 < th dose dependent rect. 10 1
851 112.01 humidity 90.0 4320 > th dose independent rect. 14 14
855 112.01 radiation 40.0 43200 < th dose independent rect. 16 16
860 112.01 humidity 90.0 4320 > th dose independent rect. 7 23
862 112.01 humidity 50.0 14400 > th dose dependent rect. 23 3
877 112.02 radiation 40.0 43200 < th dose independent rect. 22 10
893 112.02 wind 7.0 10 > th dose dependent rect. 9 2
923 112.03 radiation 40.0 43200 < th dose independent rect. 24 8
946 112.03 temperature 25.0 1440 < th dose dependent rect. 7 1
951 112.03 humidity 60.0 43200 < th dose dependent rect. 9 1
959 112.04 wind 1.0 43200 > th dose independent rect. 2 1
963 112.04 temperature 20.0 90 < th dose independent rect. 7 2
965 112.04 temperature 20.0 30 > th dose independent rect. 9 9
985 112.04 humidity 90.0 4320 > th dose independent rect. 16 23
987 112.04 radiation 1.0 4320 < th dose dependent rect. 3 2
989 112.04 humidity 80.0 14400 > th dose dependent rect. 22 9
990 112.04 radiation 40.0 43200 > th dose dependent rect. 15 17
992 112.05 temperature 20.0 1440 < th dose independent sin 3 NA
993 112.05 humidity 90.0 4320 > th dose independent no NA NA
999 112.05 temperature 20.0 10 > th dose independent rect. 6 3