Os08g0511000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os08g0511000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 161.77 | 0.598 | 5.54 | 1.3 | 3.02 | 0.281 | 2.35 | -3.98 | 0.0944 | 18.7 | 19.55 | 1401 | -- | -- |
| 175.97 | 0.623 | 5.65 | 0.64 | 3.08 | 0.9 | 2.21 | -- | -0.0517 | 18.5 | 19.55 | 1401 | -- | -- |
| 168.96 | 0.605 | 5.54 | 1.21 | 3.05 | 0.422 | -- | -3.59 | 0.0954 | 18.7 | 19.44 | 702 | -- | -- |
| 187.48 | 0.642 | 5.65 | 0.616 | 3.08 | 0.906 | -- | -- | -0.0456 | 18.4 | 19.44 | 702 | -- | -- |
| 651.48 | 1.19 | 5.47 | 1.4 | -- | 0.372 | -- | -3.8 | 0.08 | -- | 20.4 | 1393 | -- | -- |
| 203.04 | 0.668 | 5.69 | 0.389 | 3.04 | -- | 2.07 | -- | -0.191 | 18.7 | -- | -- | -- | -- |
| 213.8 | 0.685 | 5.68 | 0.358 | 3.05 | -- | -- | -- | -0.185 | 18.6 | -- | -- | -- | -- |
| 665.2 | 1.2 | 5.57 | 0.725 | -- | 1.57 | -- | -- | -0.00229 | -- | 18.4 | 1434 | -- | -- |
| 196.87 | 0.657 | 5.67 | -- | 3.07 | 0.77 | -- | -- | -0.131 | 18.5 | 19.44 | 702 | -- | -- |
| 698.48 | 1.23 | 5.62 | 0.285 | -- | -- | -- | -- | -0.246 | -- | -- | -- | -- | -- |
| 217.18 | 0.689 | 5.69 | -- | 3.04 | -- | -- | -- | -0.225 | 18.6 | -- | -- | -- | -- |
| 678.84 | 1.21 | 5.6 | -- | -- | 1.51 | -- | -- | -0.164 | -- | 18.06 | 1477 | -- | -- |
| 700.63 | 1.24 | 5.63 | -- | -- | -- | -- | -- | -0.278 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 158.18 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 19 |
| 10 | 161.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 19 |
| 12 | 161.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 19 |
| 48 | 162.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 49 | 162.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 62 | 162.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 10 |
| 67 | 162.42 | temperature | 25 | 1440 | < th | dose dependent | sin | 17 | NA |
| 103 | 162.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 104 | 162.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 20 |
| 114 | 162.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 152 | 162.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 158 | 162.93 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 160 | 162.93 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 164 | 162.94 | temperature | 20 | 1440 | < th | dose independent | sin | 2 | NA |
| 175 | 162.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 189 | 163.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 203 | 163.04 | temperature | 20 | 1440 | > th | dose independent | sin | 2 | NA |
| 205 | 163.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 214 | 163.07 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 234 | 163.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 249 | 163.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 269 | 163.18 | temperature | 20 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 270 | 163.18 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 275 | 163.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 322 | 163.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 2 |
| 324 | 163.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 346 | 163.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 350 | 163.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 571 | 164.07 | temperature | 20 | 1440 | < th | dose independent | sin | 17 | NA |
| 575 | 164.08 | temperature | 20 | 1440 | > th | dose independent | sin | 17 | NA |
| 583 | 164.10 | temperature | 20 | 1440 | < th | dose independent | rect. | 10 | 15 |
| 595 | 164.13 | temperature | 15 | 1440 | > th | dose dependent | rect. | 16 | 6 |
| 604 | 164.16 | temperature | 15 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 610 | 164.19 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 16 |
| 615 | 164.20 | temperature | 15 | 1440 | > th | dose dependent | sin | 17 | NA |
| 620 | 164.21 | temperature | 15 | 1440 | > th | dose dependent | rect. | 13 | 14 |
| 776 | 164.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 812 | 164.51 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 8 |