Os08g0509400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Amygdalin hydrolase isoform AH I precursor (EC 3.2.1.117).
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Os08g0509400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Amygdalin hydrolase isoform AH I precursor (EC 3.2.1.117).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 268.7 | 0.77 | 7.44 | -6.82 | 1.1 | 2.83 | -0.599 | -2.59 | -0.957 | 16.9 | 24.57 | 1361 | -- | -- |
| 270.8 | 0.766 | 7.4 | -6.15 | 1.11 | 2.68 | -0.791 | -- | -0.943 | 16.8 | 22.9 | 1340 | -- | -- |
| 269.41 | 0.764 | 7.45 | -6.77 | 1.11 | 2.84 | -- | -2.32 | -1 | 16.9 | 24.13 | 1357 | -- | -- |
| 271.42 | 0.767 | 7.4 | -6.15 | 1.11 | 2.67 | -- | -- | -0.953 | 16.9 | 22.92 | 1338 | -- | -- |
| 303.24 | 0.811 | 7.45 | -6.7 | -- | 2.96 | -- | -1.79 | -1.13 | -- | 22.83 | 1790 | -- | -- |
| 526.17 | 1.08 | 7.27 | -5.23 | 0.871 | -- | -0.807 | -- | -0.402 | 17.7 | -- | -- | -- | -- |
| 527.65 | 1.08 | 7.28 | -5.22 | 0.868 | -- | -- | -- | -0.406 | 17.9 | -- | -- | -- | -- |
| 305.56 | 0.814 | 7.39 | -6.21 | -- | 2.85 | -- | -- | -1.01 | -- | 22.64 | 1802 | -- | -- |
| 1170.66 | 1.59 | 7.24 | -- | 1.02 | 1.3 | -- | -- | 0.102 | 16.7 | 27.8 | 1275 | -- | -- |
| 566.75 | 1.11 | 7.26 | -5.25 | -- | -- | -- | -- | -0.426 | -- | -- | -- | -- | -- |
| 1246.77 | 1.65 | 7.14 | -- | 0.951 | -- | -- | -- | 0.176 | 17.6 | -- | -- | -- | -- |
| 1214.25 | 1.62 | 7.18 | -- | -- | 1.67 | -- | -- | -0.0704 | -- | 21.8 | 440 | -- | -- |
| 1293.75 | 1.68 | 7.13 | -- | -- | -- | -- | -- | 0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 263.83 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 2 | 264.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 3 | 265.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 6 | 265.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 38 | 268.34 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 114 | 269.77 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 20 |
| 139 | 270.03 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 267 | 271.12 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 828 | 283.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 972 | 287.11 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |