Os08g0509200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Beta-primeverosidase (EC 3.2.1.149).
FiT-DB / Search/ Help/ Sample detail
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Os08g0509200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Beta-primeverosidase (EC 3.2.1.149).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 240.05 | 0.728 | 7.43 | -4.49 | 1.69 | -2.81 | 0.0898 | -3.73 | -0.678 | 15.5 | 1.212 | 2878 | -- | -- |
| 250.43 | 0.737 | 7.44 | -4.96 | 1.48 | -2.58 | -0.5 | -- | -0.715 | 15.8 | 1.65 | 2929 | -- | -- |
| 239.73 | 0.721 | 7.43 | -4.48 | 1.7 | -2.81 | -- | -3.71 | -0.677 | 15.4 | 1.22 | 2872 | -- | -- |
| 247.57 | 0.733 | 7.44 | -4.93 | 1.38 | -2.65 | -- | -- | -0.798 | 16.1 | 1.65 | 2956 | -- | -- |
| 256.68 | 0.746 | 7.42 | -4.2 | -- | -3.29 | -- | -3.33 | -0.635 | -- | 1.581 | 3327 | -- | -- |
| 355.5 | 0.884 | 7.38 | -4.71 | 1.6 | -- | -0.124 | -- | -0.339 | 15.6 | -- | -- | -- | -- |
| 355.54 | 0.883 | 7.38 | -4.72 | 1.6 | -- | -- | -- | -0.339 | 15.6 | -- | -- | -- | -- |
| 250.51 | 0.737 | 7.45 | -5.03 | -- | -3.37 | -- | -- | -0.76 | -- | 1.58 | 3331 | -- | -- |
| 803.99 | 1.32 | 7.37 | -- | 1.83 | -2.41 | -- | -- | -0.217 | 15.7 | 8.74 | 2892 | -- | -- |
| 497.93 | 1.04 | 7.38 | -4.78 | -- | -- | -- | -- | -0.382 | -- | -- | -- | -- | -- |
| 941.78 | 1.44 | 7.26 | -- | 1.69 | -- | -- | -- | 0.186 | 15.6 | -- | -- | -- | -- |
| 794 | 1.31 | 7.45 | -- | -- | -3.82 | -- | -- | -0.692 | -- | 8.29 | 9216 | -- | -- |
| 1101.46 | 1.55 | 7.26 | -- | -- | -- | -- | -- | 0.149 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 224.76 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 2 | 226.03 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 5 | 226.89 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 7 | 227.85 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 8 | 227.89 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 16 |
| 10 | 227.92 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 25 | 227.93 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 6 |
| 32 | 227.95 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 13 |
| 69 | 228.47 | temperature | 30.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 70 | 228.48 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 71 | 228.50 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 72 | 228.52 | temperature | 30.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 75 | 228.68 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 78 | 228.73 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 79 | 228.73 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 85 | 228.83 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 4 |
| 87 | 228.84 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 7 |
| 115 | 229.26 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 118 | 229.26 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 124 | 229.31 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 10 |
| 148 | 229.48 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 152 | 229.52 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 153 | 229.52 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 158 | 229.55 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 166 | 229.65 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 15 | 15 |
| 377 | 230.76 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 12 |
| 380 | 230.76 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 21 |
| 382 | 230.77 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 16 |
| 396 | 230.82 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 428 | 230.93 | radiation | 1.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 444 | 231.01 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 13 | 7 |
| 473 | 231.05 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 13 | 15 |
| 494 | 231.09 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 504 | 231.10 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 15 | 14 |
| 556 | 231.17 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 16 | 14 |
| 578 | 231.23 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 15 | 5 |
| 590 | 231.28 | wind | 5.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 616 | 231.38 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 20 | NA |
| 636 | 231.52 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 645 | 231.57 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 15 |
| 672 | 231.65 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 16 | 3 |
| 713 | 231.79 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 16 | 14 |
| 715 | 231.80 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 2 | 18 |
| 723 | 231.80 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 725 | 231.81 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 5 | 15 |
| 726 | 231.81 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 3 | 16 |
| 752 | 231.82 | temperature | 30.0 | 14400 | < th | dose independent | no | NA | NA |
| 823 | 231.91 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 16 | 13 |
| 825 | 231.92 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 828 | 231.93 | temperature | 30.0 | 14400 | > th | dose independent | no | NA | NA |
| 930 | 231.98 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 16 | 4 |
| 952 | 232.01 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 971 | 232.05 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 19 | 1 |