Os08g0509100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Lipoxygenase, chloroplast precursor (EC 1.13.11.12).
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Os08g0509100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Lipoxygenase, chloroplast precursor (EC 1.13.11.12).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 315.46 | 0.834 | 8.56 | 4.9 | 1.53 | 1.27 | -0.308 | 5.63 | 0.251 | 3.29 | 1.113 | 26874 | 15.1 | 15.9 |
| 342.65 | 0.862 | 8.7 | 4.07 | 1.7 | 1.32 | -0.594 | -- | 0.153 | 3.25 | 3.009 | 30301 | 15.2 | 15.8 |
| 313.24 | 0.824 | 8.54 | 4.94 | 1.55 | 1.26 | -- | 5.49 | 0.248 | 3.17 | 1.135 | 30404 | 15.2 | 16 |
| 322.26 | 0.836 | 8.69 | 4.1 | 1.59 | 2.37 | -- | -- | 0.0515 | 3.3 | 2.982 | 30407 | 15.3 | 15.6 |
| 448.61 | 0.986 | 8.55 | 5.01 | -- | 1.22 | -- | 5.58 | 0.335 | -- | 1.171 | 31717 | 16.1 | 16.1 |
| 428.37 | 0.97 | 8.66 | 3.58 | 1.61 | -- | 0.00461 | -- | 0.25 | 3.11 | -- | -- | -- | -- |
| 428.37 | 0.969 | 8.66 | 3.58 | 1.61 | -- | -- | -- | 0.25 | 3.11 | -- | -- | -- | -- |
| 419.64 | 0.954 | 8.7 | 4.82 | -- | 2.87 | -- | -- | -0.113 | -- | 3.02 | 31253 | 15 | 14.7 |
| 454.53 | 0.993 | 8.79 | -- | 1.08 | 2.7 | -- | -- | -0.435 | 3.54 | 0.5567 | 47520 | 14.3 | 18.7 |
| 576.89 | 1.12 | 8.65 | 3.65 | -- | -- | -- | -- | 0.292 | -- | -- | -- | -- | -- |
| 765.77 | 1.29 | 8.75 | -- | 1.68 | -- | -- | -- | -0.149 | 3.12 | -- | -- | -- | -- |
| 509.21 | 1.05 | 9.03 | -- | -- | 3.29 | -- | -- | -1.42 | -- | 1.862 | 47520 | 13.2 | 22.3 |
| 927.66 | 1.42 | 8.74 | -- | -- | -- | -- | -- | -0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 302.28 | humidity | 80 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 2 | 302.36 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 3 | 304.15 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 5 | 304.57 | humidity | 70 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 8 | 304.63 | humidity | 70 | 43200 | > th | dose independent | rect. | 14 | 19 |
| 12 | 304.80 | humidity | 70 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 28 | 305.23 | humidity | 50 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 58 | 305.65 | humidity | 70 | 43200 | > th | dose independent | sin | 14 | NA |
| 67 | 305.80 | humidity | 70 | 43200 | < th | dose independent | sin | 15 | NA |
| 69 | 305.82 | humidity | 80 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 99 | 306.16 | humidity | 80 | 43200 | < th | dose dependent | rect. | 12 | 8 |
| 162 | 306.66 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 166 | 306.71 | humidity | 50 | 43200 | > th | dose dependent | rect. | 5 | 17 |
| 194 | 306.92 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 224 | 307.15 | humidity | 90 | 43200 | < th | dose dependent | rect. | 6 | 17 |
| 235 | 307.21 | humidity | 90 | 43200 | < th | dose dependent | sin | 18 | NA |
| 357 | 307.69 | humidity | 50 | 43200 | > th | dose dependent | rect. | 10 | 12 |
| 361 | 307.70 | humidity | 60 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 362 | 307.70 | humidity | 50 | 43200 | > th | dose dependent | sin | 20 | NA |
| 409 | 307.84 | humidity | 50 | 43200 | > th | dose dependent | rect. | 12 | 10 |
| 501 | 308.11 | humidity | 90 | 43200 | < th | dose dependent | rect. | 12 | 22 |
| 550 | 308.27 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 13 |
| 551 | 308.28 | humidity | 70 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 641 | 308.42 | humidity | 50 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 647 | 308.43 | temperature | 25 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 674 | 308.47 | humidity | 90 | 43200 | < th | dose dependent | no | NA | NA |
| 692 | 308.50 | humidity | 50 | 43200 | > th | dose dependent | no | NA | NA |
| 701 | 308.51 | radiation | 10 | 43200 | < th | dose dependent | rect. | 15 | 3 |
| 719 | 308.53 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 763 | 308.58 | humidity | 70 | 43200 | > th | dose independent | no | NA | NA |
| 789 | 308.62 | humidity | 50 | 43200 | > th | dose dependent | rect. | 12 | 23 |
| 790 | 308.63 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 844 | 308.78 | radiation | 10 | 43200 | < th | dose dependent | rect. | 14 | 12 |
| 845 | 308.78 | radiation | 10 | 43200 | < th | dose dependent | rect. | 14 | 14 |
| 858 | 308.80 | radiation | 10 | 43200 | < th | dose dependent | rect. | 14 | 5 |
| 913 | 308.98 | temperature | 25 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 928 | 309.06 | radiation | 10 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 968 | 309.15 | humidity | 70 | 43200 | < th | dose independent | rect. | 5 | 15 |