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Os08g0508800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lipoxygenase, chloroplast precursor (EC 1.13.11.12).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.64 (0.125) R2 : 0.53
β1 : 4.12 (0.737) R2dD : 0.155 R2D : -0.169
β2 : 2.95 (0.225) R2dC : 0.184 R2C : 0.0624
β3 : -6.09 (0.356) R2dE : 0.621 R2E : 0.241
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 8.62 (2.51) R2dD*E : 0.0617 R2D*E : -0.164
γ1 : 0.983 (0.249) R2dN8 : 0.0337 R2N8 : -0.0206
σ : 1.74
deviance : 1403.01
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_____
C
peak time of C : 0.198
E
wheather : temperature
threshold : 25.75
memory length : 1305
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 13.1
open length of G : 4.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1402.08 1.76 7.64 4.09 2.97 -6.1 0.474 8.47 0.977 0.206 25.73 1302 13.1 4.82
1466.51 1.78 7.95 2.84 2.79 -5.73 0.867 -- 0.34 0.42 26.07 1333 13.4 4.22
1403.01 1.74 7.64 4.12 2.95 -6.09 -- 8.62 0.983 0.198 25.75 1305 13.1 4.8
1439.56 1.77 7.95 2.07 2.75 -5.16 -- -- 0.396 0.227 26.16 1330 13.4 4.45
1828.14 1.99 7.59 4.04 -- -6.1 -- 8.72 1.02 -- 25.79 1491 13.4 5.59
2675.16 2.42 8 0.0431 2.21 -- -0.175 -- 0.136 23.4 -- -- -- --
2675.29 2.42 8 0.0503 2.21 -- -- -- 0.137 23.4 -- -- -- --
1857.02 2.01 7.87 1.71 -- -5.14 -- -- 0.466 -- 25.6 1478 15 3.98
1520.72 1.82 7.99 -- 2.84 -4.89 -- -- 0.115 0.206 26.4 1309 13.4 4.63
2982.5 2.55 7.94 0.107 -- -- -- -- 0.159 -- -- -- -- --
2675.36 2.42 8 -- 2.21 -- -- -- 0.131 23.4 -- -- -- --
1918.1 2.04 7.87 -- -- -4.99 -- -- 0.315 -- 25.43 1502 15.4 3.57
2982.8 2.55 7.95 -- -- -- -- -- 0.147 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1457.62 temperature 25 1440 > th dose dependent rect. 13 6
3 1460.29 temperature 25 1440 > th dose dependent rect. 15 3
5 1461.17 temperature 25 1440 > th dose dependent rect. 13 9
26 1472.19 temperature 25 1440 > th dose dependent rect. 13 20
27 1472.51 temperature 25 1440 > th dose dependent sin 19 NA
60 1480.15 temperature 25 1440 > th dose dependent rect. 7 15
209 1492.84 temperature 25 1440 > th dose dependent rect. 21 23
211 1493.06 temperature 25 1440 > th dose dependent no NA NA
324 1534.27 wind 7 43200 > th dose independent rect. 10 6
327 1535.93 wind 5 43200 > th dose dependent rect. 10 5
330 1536.44 wind 7 43200 < th dose independent rect. 10 6
358 1546.40 wind 7 43200 > th dose independent rect. 3 13
359 1546.48 wind 5 43200 > th dose dependent rect. 12 2
361 1547.13 wind 7 43200 < th dose independent rect. 3 13
362 1547.68 wind 7 43200 > th dose independent rect. 5 10
365 1548.61 wind 7 43200 < th dose independent rect. 5 10
405 1558.29 wind 7 43200 < th dose independent sin 2 NA
406 1558.56 wind 7 43200 > th dose independent sin 2 NA
410 1559.82 wind 7 43200 < th dose independent rect. 12 2
416 1561.01 wind 7 43200 > th dose dependent rect. 10 11
446 1570.30 wind 7 43200 > th dose dependent rect. 11 19
460 1573.50 wind 5 43200 > th dose dependent rect. 3 13
481 1576.84 wind 7 43200 > th dose independent rect. 10 12
504 1579.02 temperature 30 1440 < th dose independent rect. 9 7
522 1581.46 wind 7 43200 < th dose independent rect. 10 12
524 1581.83 temperature 30 1440 < th dose independent rect. 11 5
525 1581.94 temperature 30 1440 < th dose independent rect. 18 22
554 1585.36 wind 7 43200 > th dose independent rect. 20 20
572 1588.12 radiation 30 1440 > th dose independent rect. 7 1
605 1588.66 wind 9 43200 < th dose independent rect. 10 20
619 1590.23 wind 7 43200 > th dose independent rect. 3 19
640 1590.93 temperature 30 1440 < th dose independent rect. 11 20
643 1590.98 temperature 30 1440 < th dose independent rect. 11 13
645 1591.10 temperature 30 1440 < th dose independent rect. 11 8
649 1591.17 temperature 30 1440 < th dose independent rect. 11 18
652 1591.30 temperature 30 1440 < th dose independent rect. 9 22
656 1591.36 wind 7 43200 > th dose independent rect. 10 20
657 1591.37 temperature 30 1440 < th dose independent rect. 9 15
660 1591.44 temperature 30 1440 < th dose independent rect. 9 10
663 1591.52 temperature 30 1440 < th dose independent rect. 11 16
665 1591.52 temperature 30 1440 < th dose independent rect. 9 20
674 1591.84 wind 7 43200 < th dose independent rect. 3 19
675 1591.85 temperature 30 1440 < th dose independent rect. 9 18
677 1591.95 wind 7 43200 < th dose independent rect. 20 20
682 1592.49 wind 9 43200 < th dose independent rect. 10 17
686 1592.73 temperature 30 1440 < th dose independent rect. 13 11
687 1592.73 temperature 30 1440 < th dose independent rect. 13 19
699 1592.99 temperature 30 1440 < th dose independent rect. 13 6
703 1593.05 temperature 30 1440 < th dose independent rect. 13 16
705 1593.09 temperature 30 1440 < th dose independent rect. 13 2
720 1593.48 temperature 30 1440 < th dose independent rect. 13 14
745 1594.76 temperature 25 14400 > th dose dependent rect. 17 1
747 1594.95 wind 5 43200 > th dose dependent sin 2 NA
769 1596.54 temperature 30 1440 < th dose independent sin 19 NA
828 1599.26 temperature 30 1440 < th dose independent rect. 2 14
832 1599.38 temperature 30 1440 < th dose independent rect. 13 23
835 1599.51 temperature 30 1440 < th dose independent rect. 4 12
842 1599.74 temperature 30 1440 < th dose independent rect. 20 20
843 1599.82 temperature 30 1440 < th dose independent rect. 6 10
850 1600.01 wind 7 43200 > th dose independent rect. 17 23
880 1600.94 wind 7 43200 < th dose independent rect. 17 23
888 1601.46 temperature 30 1440 > th dose independent rect. 9 7