Os08g0508100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0508100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.17 | 0.451 | 7.43 | -0.0704 | 1.31 | 0.953 | -0.367 | 2.73 | -0.303 | 8.35 | 19.6 | 1500 | -- | -- |
| 100.05 | 0.466 | 7.5 | -0.847 | 1.43 | 1.1 | -0.198 | -- | -0.485 | 8.47 | 21.26 | 2324 | -- | -- |
| 92.59 | 0.448 | 7.43 | -0.0802 | 1.31 | 0.96 | -- | 2.74 | -0.303 | 8.35 | 19.51 | 1500 | -- | -- |
| 100.12 | 0.466 | 7.52 | -0.876 | 1.46 | 1.12 | -- | -- | -0.512 | 8.44 | 21.3 | 2238 | -- | -- |
| 187.22 | 0.637 | 7.44 | 0.0029 | -- | 0.887 | -- | 2.88 | -0.249 | -- | 20 | 1455 | -- | -- |
| 135.46 | 0.546 | 7.47 | -0.47 | 1.31 | -- | -0.365 | -- | -0.27 | 8.19 | -- | -- | -- | -- |
| 135.87 | 0.546 | 7.47 | -0.481 | 1.31 | -- | -- | -- | -0.27 | 8.18 | -- | -- | -- | -- |
| 197.36 | 0.654 | 7.55 | -0.854 | -- | 0.964 | -- | -- | -0.46 | -- | 21.4 | 2920 | -- | -- |
| 116.89 | 0.504 | 7.46 | -- | 1.35 | 0.843 | -- | -- | -0.357 | 8.42 | 22.4 | 1378 | -- | -- |
| 230.69 | 0.71 | 7.5 | -0.47 | -- | -- | -- | -- | -0.255 | -- | -- | -- | -- | -- |
| 141.96 | 0.557 | 7.45 | -- | 1.31 | -- | -- | -- | -0.217 | 8.21 | -- | -- | -- | -- |
| 211.31 | 0.677 | 7.52 | -- | -- | 0.806 | -- | -- | -0.335 | -- | 21.89 | 1422 | -- | -- |
| 236.53 | 0.718 | 7.49 | -- | -- | -- | -- | -- | -0.203 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.42 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 2 | 90.52 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 5 | 90.77 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 14 | 91.23 | temperature | 20 | 1440 | > th | dose dependent | sin | 8 | NA |
| 19 | 91.29 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 28 | 91.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 16 |
| 30 | 91.49 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 36 | 91.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 42 | 91.56 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 3 |
| 43 | 91.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 18 |
| 52 | 91.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 16 |
| 235 | 92.23 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 253 | 92.33 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 268 | 92.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 285 | 92.47 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 286 | 92.47 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 304 | 92.54 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 349 | 92.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 401 | 92.93 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 635 | 93.49 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 644 | 93.49 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 751 | 93.61 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 20 |
| 755 | 93.61 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 786 | 93.65 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 809 | 93.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 21 |
| 945 | 93.81 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 952 | 93.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 23 |