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Os08g0507400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.15 (0.0394) R2 : 0.797
β1 : -2.36 (0.143) R2dD : 0.128 R2D : 0.127
β2 : 2.85 (0.117) R2dC : 0.361 R2C : 0.565
β3 : -1.3 (0.0988) R2dE : 0.119 R2E : 0.301
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.177 (0.0905) R2dN8 : 0.00254 R2N8 : -0.0143
σ : 0.725
deviance : 242.36
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C
peak time of C : 16.9
E
wheather : temperature
threshold : 24.55
memory length : 202
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 14.4
open length of G : 15.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
241.6 0.73 9.15 -2.42 2.86 -1.32 0.652 0.377 -0.184 16.9 24.5 216 14.5 15
242.06 0.725 9.15 -2.36 2.86 -1.31 0.363 -- -0.185 16.9 24.56 205 14.3 15.3
242.22 0.725 9.16 -2.39 2.87 -1.32 -- 0.21 -0.177 16.9 24.57 202 14.5 15
242.36 0.725 9.15 -2.36 2.85 -1.3 -- -- -0.177 16.9 24.55 202 14.4 15.2
302.64 0.81 8.98 -2.16 -- -4.38 -- 0.0764 0.354 -- 34 696 15 14.7
309.1 0.824 9.04 -2.17 3.67 -- 0.45 -- 0.315 16.2 -- -- -- --
309.66 0.824 9.04 -2.17 3.67 -- -- -- 0.317 16.2 -- -- -- --
301.31 0.808 8.97 -2.21 -- -4.16 -- -- 0.367 -- 34.14 698 14.9 14.8
386.74 0.916 9.09 -- 3.06 -1.08 -- -- 0.178 16.8 24.58 182 14.9 14.7
1036.65 1.5 9.02 -2.31 -- -- -- -- 0.22 -- -- -- -- --
433.53 0.974 8.98 -- 3.71 -- -- -- 0.559 16.2 -- -- -- --
428.16 0.964 8.91 -- -- -3.42 -- -- 0.609 -- 39.82 777 13.6 16.4
1177.99 1.6 8.96 -- -- -- -- -- 0.477 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 248.13 temperature 30.0 90 < th dose dependent rect. 15 16
2 249.22 temperature 30.0 90 < th dose dependent rect. 17 14
4 249.71 temperature 25.0 270 < th dose independent rect. 14 15
39 255.83 wind 7.0 43200 < th dose independent rect. 11 1
40 255.90 wind 7.0 43200 > th dose independent rect. 11 2
47 256.75 wind 7.0 43200 > th dose dependent rect. 11 2
65 258.63 wind 7.0 43200 > th dose dependent rect. 10 4
71 259.12 temperature 20.0 10 > th dose independent rect. 7 22
83 259.64 temperature 15.0 270 > th dose dependent rect. 17 9
85 259.68 wind 9.0 14400 < th dose independent rect. 5 7
90 259.82 wind 3.0 43200 < th dose dependent rect. 4 2
101 260.26 wind 9.0 43200 < th dose dependent rect. 1 1
103 260.33 temperature 20.0 270 > th dose dependent rect. 21 4
116 261.02 temperature 20.0 90 > th dose dependent rect. 21 6
117 261.03 wind 9.0 43200 > th dose independent rect. 9 6
118 261.06 wind 1.0 43200 > th dose dependent rect. 1 1
133 261.58 wind 9.0 14400 > th dose independent rect. 6 6
148 262.00 wind 1.0 43200 > th dose dependent rect. 5 1
149 262.00 precipitation 0.1 43200 > th dose dependent rect. 18 2
150 262.05 wind 9.0 43200 < th dose dependent rect. 5 1
165 262.36 wind 9.0 14400 > th dose dependent rect. 6 6
169 262.42 wind 1.0 43200 > th dose independent rect. 4 4
205 263.15 wind 7.0 43200 < th dose dependent rect. 22 8
209 263.20 wind 1.0 43200 < th dose independent rect. 4 5
210 263.20 temperature 20.0 10 > th dose dependent rect. 22 6
214 263.27 temperature 20.0 270 > th dose dependent rect. 22 2
225 263.43 precipitation 0.1 43200 > th dose independent rect. 18 2
227 263.45 precipitation 0.1 43200 > th dose dependent rect. 16 1
231 263.54 precipitation 0.1 43200 < th dose independent rect. 18 2
232 263.54 precipitation 0.1 43200 < th dose dependent rect. 18 2
236 263.59 wind 1.0 43200 < th dose dependent rect. 4 5
245 263.76 temperature 10.0 270 > th dose dependent rect. 6 20
247 263.78 radiation 40.0 4320 < th dose independent rect. 23 10
257 263.94 wind 1.0 43200 > th dose independent rect. 22 8
261 264.01 radiation 40.0 4320 < th dose independent rect. 7 2
264 264.02 radiation 40.0 4320 < th dose independent rect. 16 17
267 264.04 wind 1.0 43200 > th dose independent rect. 5 2
270 264.07 wind 1.0 43200 > th dose dependent rect. 22 8
301 264.35 wind 1.0 43200 < th dose independent rect. 22 9
305 264.38 temperature 10.0 10 > th dose dependent rect. 7 22
309 264.46 radiation 40.0 4320 < th dose independent rect. 5 4
312 264.48 radiation 40.0 4320 < th dose independent rect. 19 14
320 264.55 precipitation 0.1 43200 > th dose independent rect. 16 1
325 264.58 wind 9.0 43200 > th dose independent rect. 18 1
326 264.59 precipitation 0.1 43200 < th dose independent rect. 16 1
328 264.59 precipitation 0.1 43200 < th dose dependent rect. 16 1
329 264.59 wind 1.0 43200 < th dose dependent rect. 4 7
363 265.01 wind 9.0 43200 < th dose independent rect. 4 12
393 265.40 wind 9.0 43200 < th dose independent rect. 18 1
428 265.73 precipitation 0.1 43200 > th dose independent rect. 15 5
430 265.75 precipitation 0.1 43200 < th dose independent rect. 15 5
431 265.75 precipitation 0.1 43200 < th dose dependent rect. 15 5
432 265.77 wind 9.0 43200 > th dose dependent rect. 18 1
463 266.09 temperature 25.0 270 < th dose independent sin 13 NA
486 266.28 wind 9.0 43200 > th dose independent rect. 24 16
494 266.40 wind 9.0 43200 < th dose independent rect. 21 19
529 266.64 humidity 90.0 14400 > th dose independent rect. 13 1
545 266.72 wind 9.0 43200 > th dose independent rect. 21 19
559 266.79 radiation 30.0 14400 > th dose independent rect. 7 1
651 267.20 radiation 20.0 43200 > th dose independent rect. 9 1
675 267.38 radiation 10.0 4320 > th dose dependent rect. 7 1
680 267.42 radiation 20.0 4320 > th dose dependent rect. 6 3
699 267.52 radiation 10.0 43200 > th dose independent rect. 7 2
709 267.56 wind 1.0 43200 > th dose dependent rect. 11 1
713 267.57 wind 1.0 43200 > th dose dependent rect. 1 6
730 267.70 temperature 25.0 270 < th dose independent rect. 1 4
736 267.72 wind 9.0 43200 < th dose dependent rect. 11 1
743 267.75 precipitation 0.1 43200 > th dose dependent rect. 13 4
748 267.77 wind 3.0 43200 < th dose independent rect. 5 1
750 267.78 wind 9.0 43200 < th dose independent sin 1 NA
786 267.93 wind 1.0 43200 < th dose independent rect. 18 14
825 268.10 wind 9.0 43200 < th dose independent rect. 19 21
834 268.14 wind 9.0 43200 > th dose independent rect. 19 21
859 268.19 precipitation 0.1 43200 > th dose dependent rect. 12 8
860 268.20 wind 9.0 43200 < th dose dependent rect. 1 13
869 268.26 radiation 40.0 4320 < th dose dependent rect. 7 1
883 268.34 wind 9.0 43200 < th dose dependent rect. 23 15
893 268.42 wind 1.0 43200 > th dose dependent rect. 1 13
898 268.46 wind 9.0 43200 > th dose independent sin 1 NA
932 268.56 radiation 30.0 43200 > th dose independent rect. 11 1
945 268.61 wind 1.0 43200 > th dose dependent rect. 23 15