Os08g0506400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os08g0506400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 271.44 | 0.774 | 4.52 | -1.3 | 0.552 | -1.47 | -1.89 | 1.46 | -0.686 | 15.6 | 17 | 559 | -- | -- |
| 272.95 | 0.769 | 4.56 | -1.59 | 0.541 | -1.42 | -1.71 | -- | -0.775 | 15.3 | 16.59 | 555 | -- | -- |
| 282.15 | 0.782 | 4.53 | -1.31 | 0.523 | -1.5 | -- | 1.4 | -0.687 | 15.5 | 16.7 | 578 | -- | -- |
| 282.36 | 0.783 | 4.57 | -1.6 | 0.567 | -1.49 | -- | -- | -0.771 | 15.3 | 16.4 | 534 | -- | -- |
| 287.46 | 0.79 | 4.51 | -1.21 | -- | -1.39 | -- | 1.61 | -0.644 | -- | 17.03 | 982 | -- | -- |
| 305.73 | 0.82 | 4.61 | -1.92 | 0.443 | -- | -1.47 | -- | -1 | 13.6 | -- | -- | -- | -- |
| 312.66 | 0.828 | 4.61 | -1.97 | 0.467 | -- | -- | -- | -1.01 | 12.1 | -- | -- | -- | -- |
| 291.47 | 0.795 | 4.56 | -1.57 | -- | -1.39 | -- | -- | -0.78 | -- | 15.85 | 963 | -- | -- |
| 342.27 | 0.862 | 4.51 | -- | 0.672 | -2.34 | -- | -- | -0.501 | 16.3 | 8.064 | 574 | -- | -- |
| 326.41 | 0.844 | 4.62 | -1.99 | -- | -- | -- | -- | -1.02 | -- | -- | -- | -- | -- |
| 415.03 | 0.953 | 4.56 | -- | 0.494 | -- | -- | -- | -0.792 | 12.3 | -- | -- | -- | -- |
| 332.99 | 0.85 | 4.46 | -- | -- | -2.05 | -- | -- | -0.329 | -- | 10.53 | 8142 | -- | -- |
| 430.41 | 0.968 | 4.57 | -- | -- | -- | -- | -- | -0.798 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 265.66 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 2 | 265.72 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 3 | 266.49 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 25 | 268.64 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 16 |
| 46 | 269.59 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 20 |
| 48 | 269.61 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 77 | 270.61 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 81 | 270.66 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 10 |
| 103 | 271.23 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 16 | 18 |
| 105 | 271.32 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 8 |
| 139 | 271.98 | wind | 1.0 | 270 | > th | dose independent | rect. | 20 | 16 |
| 158 | 272.15 | temperature | 20.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 163 | 272.21 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 15 | 18 |
| 203 | 272.67 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 223 | 272.93 | temperature | 30.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 235 | 273.01 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 272 | 273.23 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 277 | 273.26 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 288 | 273.31 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 360 | 273.72 | temperature | 15.0 | 720 | > th | dose dependent | no | NA | NA |
| 368 | 273.76 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 21 |
| 408 | 273.94 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 463 | 274.19 | temperature | 30.0 | 90 | < th | dose independent | rect. | 9 | 6 |
| 475 | 274.22 | temperature | 20.0 | 10 | > th | dose independent | rect. | 14 | 19 |
| 483 | 274.24 | wind | 3.0 | 90 | > th | dose independent | rect. | 13 | 8 |
| 511 | 274.34 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 12 | 21 |
| 542 | 274.46 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 579 | 274.60 | temperature | 30.0 | 720 | < th | dose dependent | no | NA | NA |
| 592 | 274.67 | wind | 1.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 676 | 274.96 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 12 | 8 |
| 740 | 275.18 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 8 |
| 751 | 275.22 | radiation | 40.0 | 90 | < th | dose independent | rect. | 12 | 9 |
| 767 | 275.27 | temperature | 15.0 | 270 | > th | dose independent | rect. | 12 | 8 |
| 862 | 275.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 16 |
| 864 | 275.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 16 |
| 868 | 275.61 | radiation | 40.0 | 10 | < th | dose independent | rect. | 12 | 10 |
| 876 | 275.63 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 894 | 275.70 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 16 |
| 895 | 275.70 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 16 |
| 929 | 275.82 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 6 | 10 |
| 938 | 275.84 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 8 |
| 952 | 275.87 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 955 | 275.88 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 970 | 275.91 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 982 | 275.94 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 13 | 9 |
| 990 | 275.96 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 16 |