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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0505700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0461) R2 : 0.207
β1 : 0.387 (0.168) R2dD : 0.00539 R2D : -0.0416
β2 : -- (--) R2dC : -- R2C : --
β3 : 6.75 (0.719) R2dE : 1.01 R2E : -0.834
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 14.7 (1.61) R2dD*E : 0.971 R2D*E : -0.728
γ1 : 0.00234 (0.0927) R2dN8 : -5.64e-05 R2N8 : -0.0353
σ : 0.787
deviance : 285.39
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 23.98
memory length : 1391
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 10.5
open length of G : 1.94

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
289.42 0.799 3.16 0.11 0.147 4.8 0.0782 11.1 -0.0833 9.17 24.44 1442 10 1.95
341.44 0.861 2.96 0.394 0.281 1.44 -0.152 -- 0.102 10.3 29.32 1107 10.8 2.8
287.02 0.789 3.16 0.0514 0.132 4.99 -- 11.6 -0.0912 9.44 24.27 1429 10.2 1.92
339.93 0.859 2.96 0.374 0.359 1.49 -- -- 0.0814 10.2 29.75 1117 11.7 1.7
285.39 0.787 3.16 0.387 -- 6.75 -- 14.7 0.00234 -- 23.98 1391 10.5 1.94
356.52 0.885 3.03 0.0285 0.152 -- 0.0978 -- -0.152 9.91 -- -- -- --
356.56 0.884 3.03 0.0322 0.151 -- -- -- -0.152 9.91 -- -- -- --
343.21 0.863 2.96 0.413 -- 1.36 -- -- 0.088 -- 28.07 1373 11.1 2.32
340.36 0.859 2.99 -- 0.282 1.24 -- -- -0.0499 9.68 28.39 1125 12.1 0.382
357.93 0.884 3.03 0.0305 -- -- -- -- -0.152 -- -- -- -- --
356.59 0.883 3.03 -- 0.151 -- -- -- -0.156 9.9 -- -- -- --
344.82 0.865 3 -- -- 1.15 -- -- 0.0216 -- 28.05 1357 11.8 0.633
357.96 0.883 3.03 -- -- -- -- -- -0.156 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 293.21 humidity 80 10 < th dose independent rect. 20 11
9 294.68 temperature 25 1440 < th dose dependent rect. 10 2
11 296.15 wind 7 1440 < th dose independent rect. 8 1
12 298.03 wind 7 1440 > th dose independent rect. 8 1
14 298.83 temperature 20 720 < th dose independent rect. 18 1
16 299.13 wind 7 1440 < th dose independent rect. 5 4
17 299.24 radiation 20 1440 > th dose independent rect. 6 1
32 299.74 temperature 20 720 < th dose independent rect. 9 11
37 300.22 temperature 20 720 < th dose independent rect. 14 6
61 303.42 humidity 90 1440 < th dose dependent rect. 3 1
65 304.77 humidity 80 10 < th dose dependent rect. 20 11
66 304.81 wind 5 1440 > th dose dependent rect. 8 1
74 306.01 humidity 80 270 < th dose dependent rect. 21 9
81 306.74 humidity 80 90 < th dose independent rect. 23 7
87 307.04 humidity 90 1440 < th dose dependent rect. 23 8
99 307.96 wind 7 1440 < th dose independent rect. 1 8
103 308.17 humidity 80 1440 < th dose independent rect. 21 4
106 308.21 humidity 80 270 < th dose independent rect. 23 5
108 308.38 humidity 90 1440 < th dose dependent rect. 2 5
112 308.66 humidity 90 1440 < th dose dependent rect. 23 5
116 308.86 humidity 80 270 < th dose dependent rect. 23 6
132 309.44 humidity 80 1440 < th dose independent rect. 22 1
141 309.73 humidity 80 270 < th dose independent rect. 1 2
142 309.73 humidity 80 270 < th dose dependent rect. 1 2
158 310.24 humidity 80 90 < th dose independent rect. 1 5
167 310.54 humidity 80 720 < th dose dependent rect. 21 2
197 311.65 temperature 20 720 > th dose independent rect. 13 8
206 311.90 temperature 20 4320 < th dose independent rect. 21 1
212 312.21 wind 7 4320 < th dose independent rect. 19 2
214 312.25 temperature 20 1440 > th dose independent rect. 18 1
215 312.27 wind 5 1440 > th dose independent rect. 12 1
220 312.36 wind 5 1440 > th dose independent rect. 7 7
229 312.51 wind 5 4320 > th dose dependent rect. 20 2
240 312.82 atmosphere 995 14400 > th dose independent rect. 16 2
243 312.97 temperature 20 4320 > th dose independent rect. 21 1
244 313.02 wind 7 4320 < th dose independent rect. 19 4
257 313.24 atmosphere 995 14400 > th dose independent rect. 16 5
260 313.30 atmosphere 995 14400 < th dose independent rect. 18 1
266 313.30 atmosphere 995 14400 < th dose dependent rect. 18 1
280 313.37 wind 9 4320 < th dose independent rect. 19 8
292 313.46 humidity 90 1440 < th dose dependent rect. 5 2
293 313.47 wind 9 4320 > th dose dependent rect. 19 3
296 313.51 wind 5 1440 < th dose independent rect. 7 7
301 313.63 wind 9 4320 > th dose dependent rect. 19 5
308 313.65 wind 9 4320 > th dose independent rect. 19 3
318 313.71 radiation 20 1440 < th dose independent rect. 5 2
321 313.74 wind 9 4320 > th dose independent rect. 19 5
367 314.05 temperature 20 720 > th dose independent rect. 13 10
369 314.12 humidity 80 10 < th dose dependent rect. 2 5
377 314.22 humidity 70 1440 > th dose dependent rect. 23 8
420 314.58 wind 5 1440 < th dose independent rect. 12 2
435 314.73 humidity 80 1440 < th dose independent rect. 21 11
457 314.88 humidity 80 1440 > th dose dependent rect. 5 1
496 315.40 humidity 70 1440 > th dose dependent rect. 3 1
501 315.45 atmosphere 995 14400 > th dose independent rect. 13 6
502 315.45 atmosphere 995 14400 > th dose independent rect. 13 8
507 315.51 humidity 50 1440 > th dose dependent rect. 5 1
515 315.62 temperature 20 720 < th dose dependent rect. 19 1
518 315.65 humidity 70 1440 > th dose dependent rect. 23 5
519 315.67 humidity 80 1440 > th dose independent rect. 6 1
534 315.83 humidity 90 1440 < th dose independent rect. 5 1
547 315.89 temperature 20 4320 > th dose independent rect. 18 4
552 315.91 atmosphere 995 14400 > th dose independent rect. 7 12
581 315.92 atmosphere 995 14400 > th dose independent rect. 7 14
596 315.98 atmosphere 995 14400 > th dose independent rect. 10 9
597 315.98 atmosphere 995 14400 > th dose independent rect. 10 11
605 316.05 humidity 80 1440 > th dose independent rect. 22 4
697 316.59 temperature 20 720 > th dose independent rect. 11 12
702 316.63 humidity 80 1440 > th dose independent rect. 21 7
708 316.71 radiation 20 1440 < th dose independent rect. 18 13
810 317.31 humidity 80 1440 > th dose independent rect. 21 10
867 317.56 wind 3 1440 > th dose dependent rect. 12 2
886 317.71 temperature 20 720 > th dose independent rect. 18 6
887 317.72 humidity 90 1440 < th dose independent rect. 1 5
992 318.54 temperature 25 720 < th dose dependent rect. 8 12
995 318.58 temperature 20 4320 < th dose independent rect. 18 4
998 318.59 wind 3 1440 > th dose dependent rect. 7 8