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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0503300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.0266) R2 : 0.0196
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.169 (0.056) R2dN8 : 0.0254 R2N8 : 0.0196
σ : 0.501
deviance : 115.32
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
105.35 0.482 3.34 0.0292 0.305 -0.435 -0.184 -0.962 0.181 1.16 80.71 4002 -- --
106.46 0.481 3.34 0.0403 0.302 -0.508 -0.258 -- 0.19 0.894 83 3877 -- --
105.46 0.478 3.34 0.022 0.308 -0.444 -- -1.03 0.185 0.921 82 3987 -- --
106.63 0.481 3.33 0.0751 0.304 -0.556 -- -- 0.203 0.644 83 3904 -- --
109.77 0.488 3.32 0.0361 -- -0.568 -- -0.84 0.232 -- 82.94 4587 -- --
110.46 0.493 3.34 0.0464 0.263 -- -0.357 -- 0.169 1.61 -- -- -- --
110.92 0.493 3.34 0.0586 0.263 -- -- -- 0.172 1.13 -- -- -- --
110.41 0.489 3.32 0.0692 -- -0.616 -- -- 0.245 -- 83 4594 -- --
106.75 0.481 3.33 -- 0.312 -0.557 -- -- 0.209 0.71 84.23 3877 -- --
115.19 0.502 3.34 0.0687 -- -- -- -- 0.177 -- -- -- -- --
111.01 0.493 3.34 -- 0.264 -- -- -- 0.165 1.14 -- -- -- --
110.53 0.49 3.32 -- -- -0.618 -- -- 0.238 -- 83 4595 -- --
115.32 0.501 3.34 -- -- -- -- -- 0.169 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 103.63 temperature 25.0 30 > th dose independent rect. 4 1
4 103.86 humidity 90.0 10 < th dose independent rect. 4 1
6 103.87 wind 1.0 30 > th dose dependent rect. 4 1
7 103.98 temperature 25.0 90 > th dose dependent rect. 4 1
13 105.10 temperature 25.0 30 > th dose dependent rect. 2 4
15 105.13 humidity 90.0 14400 > th dose independent rect. 19 2
20 105.17 humidity 70.0 4320 > th dose independent rect. 15 1
27 105.28 humidity 90.0 14400 > th dose dependent rect. 20 1
28 105.29 humidity 80.0 14400 < th dose independent rect. 13 1
30 105.30 humidity 80.0 14400 > th dose independent rect. 12 3
31 105.30 humidity 80.0 4320 < th dose dependent rect. 15 1
33 105.31 humidity 70.0 4320 < th dose independent rect. 9 7
35 105.34 wind 1.0 30 > th dose independent rect. 4 1
38 105.35 humidity 90.0 14400 < th dose independent rect. 19 1
40 105.35 humidity 80.0 1440 > th dose independent rect. 10 3
41 105.35 humidity 80.0 1440 < th dose independent rect. 10 3
42 105.35 humidity 70.0 4320 > th dose independent rect. 9 7
43 105.35 humidity 80.0 4320 < th dose dependent rect. 12 6
44 105.35 humidity 80.0 4320 < th dose dependent rect. 12 17
46 105.36 humidity 70.0 4320 < th dose independent rect. 15 1
51 105.37 humidity 80.0 1440 < th dose independent rect. 5 9
55 105.38 humidity 80.0 1440 < th dose independent rect. 7 7
58 105.38 humidity 80.0 4320 < th dose dependent rect. 12 4
74 105.39 humidity 80.0 4320 < th dose dependent rect. 13 1
90 105.41 humidity 70.0 4320 < th dose independent rect. 18 22
95 105.42 humidity 70.0 4320 < th dose independent rect. 9 5
103 105.43 humidity 80.0 14400 < th dose independent rect. 11 6
120 105.45 precipitation 0.1 4320 > th dose independent rect. 16 1
134 105.46 precipitation 0.1 720 < th dose independent rect. 5 15
135 105.46 humidity 90.0 90 < th dose dependent rect. 4 1
140 105.46 precipitation 0.1 720 < th dose dependent rect. 5 15
149 105.47 humidity 70.0 4320 < th dose independent rect. 9 11
185 105.48 precipitation 0.1 4320 > th dose dependent rect. 16 1
193 105.49 precipitation 0.1 4320 < th dose independent rect. 16 1
206 105.49 precipitation 0.1 4320 < th dose dependent rect. 16 1
220 105.50 humidity 80.0 1440 > th dose independent rect. 5 9
222 105.50 humidity 70.0 4320 > th dose independent rect. 19 21
224 105.50 humidity 80.0 4320 < th dose dependent sin 17 NA
253 105.52 humidity 70.0 4320 > th dose independent rect. 5 11
267 105.52 humidity 90.0 4320 > th dose dependent rect. 7 1
268 105.52 humidity 50.0 4320 > th dose dependent rect. 9 10
272 105.53 humidity 70.0 4320 < th dose independent sin 22 NA
332 105.55 humidity 80.0 1440 < th dose independent sin 3 NA
361 105.55 humidity 50.0 4320 > th dose dependent rect. 12 2
450 105.59 humidity 70.0 4320 > th dose independent rect. 9 13
465 105.59 humidity 70.0 4320 > th dose independent rect. 9 21
499 105.60 humidity 80.0 4320 < th dose dependent rect. 22 21
503 105.61 humidity 70.0 4320 < th dose independent no NA NA
576 105.61 humidity 90.0 4320 > th dose dependent rect. 7 3
578 105.61 humidity 70.0 1440 > th dose dependent rect. 9 4
580 105.61 humidity 50.0 4320 > th dose dependent rect. 12 7
603 105.62 humidity 60.0 14400 > th dose independent rect. 15 15
612 105.62 humidity 70.0 1440 > th dose dependent rect. 6 8
623 105.63 humidity 70.0 4320 > th dose independent sin 23 NA
629 105.63 precipitation 0.1 14400 > th dose independent rect. 13 6
630 105.63 precipitation 0.1 14400 < th dose independent rect. 13 6
638 105.63 humidity 60.0 14400 > th dose independent rect. 15 18
645 105.63 precipitation 0.1 14400 < th dose dependent rect. 13 6
647 105.63 humidity 80.0 14400 > th dose dependent rect. 9 11
666 105.64 precipitation 0.1 14400 < th dose independent rect. 11 8
686 105.64 humidity 80.0 4320 < th dose dependent no NA NA
693 105.64 precipitation 0.1 14400 < th dose dependent rect. 11 8
706 105.65 wind 1.0 4320 > th dose independent rect. 18 1
715 105.65 humidity 80.0 14400 > th dose dependent rect. 16 2
730 105.65 temperature 10.0 30 > th dose dependent rect. 5 23
731 105.65 humidity 80.0 4320 < th dose dependent rect. 1 23
781 105.66 humidity 70.0 4320 < th dose independent rect. 15 23
811 105.67 humidity 80.0 14400 > th dose independent rect. 10 1
829 105.67 humidity 50.0 4320 > th dose dependent sin 22 NA
830 105.67 wind 5.0 14400 < th dose dependent rect. 2 2
852 105.67 humidity 80.0 4320 < th dose dependent rect. 15 23
892 105.68 humidity 80.0 4320 < th dose dependent rect. 17 23
968 105.70 humidity 70.0 14400 > th dose dependent rect. 11 4
987 105.70 temperature 20.0 90 > th dose dependent rect. 8 19
992 105.71 wind 3.0 14400 < th dose independent rect. 2 2