Os08g0503000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0503000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 446.76 | 0.993 | 5.09 | -2.04 | 4.56 | -3.48 | -2.49 | 2.27 | -0.622 | 7.13 | 1.937 | 231 | 0.0503 | -- |
| 455.46 | 0.994 | 5.09 | -2.08 | 4.41 | -3.26 | -1.41 | -- | -0.615 | 7.24 | 2.038 | 224 | 1.62e-05 | -- |
| 459.59 | 0.998 | 5.11 | -2 | 4.41 | -3.26 | -- | 1.63 | -0.632 | 7.28 | 2.077 | 220 | 0.000101 | -- |
| 460.04 | 0.999 | 5.1 | -2.11 | 4.42 | -3.26 | -- | -- | -0.631 | 7.23 | 2.16 | 220 | 1.4e-05 | -- |
| 595.83 | 1.14 | 5.21 | -2.1 | -- | -3 | -- | 1.11 | -0.629 | -- | 82.7 | 2 | 8.43 | -- |
| 577.86 | 1.13 | 5.12 | -2.06 | 3.14 | -- | -1.12 | -- | -0.597 | 9.81 | -- | -- | -- | -- |
| 582.68 | 1.13 | 5.12 | -2.1 | 3.14 | -- | -- | -- | -0.599 | 9.83 | -- | -- | -- | -- |
| 583.08 | 1.12 | 5.2 | -2.09 | -- | -3.14 | -- | -- | -0.593 | -- | 3478 | 15 | 8.29 | -- |
| 579.36 | 1.12 | 5.05 | -- | 4.3 | -3.18 | -- | -- | -0.42 | 7.28 | 2.565 | 204 | 5.75e-05 | -- |
| 1173.07 | 1.6 | 5.21 | -2.13 | -- | -- | -- | -- | -0.597 | -- | -- | -- | -- | -- |
| 698.71 | 1.24 | 5.07 | -- | 3.15 | -- | -- | -- | -0.365 | 9.88 | -- | -- | -- | -- |
| 699.05 | 1.23 | 5.15 | -- | -- | -3.14 | -- | -- | -0.365 | -- | 3730 | 2 | 8.14 | -- |
| 1292.85 | 1.68 | 5.15 | -- | -- | -- | -- | -- | -0.361 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 450.01 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 16 |
| 2 | 450.65 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 16 |
| 3 | 450.72 | radiation | 1.0 | 270 | < th | dose dependent | sin | 6 | NA |
| 19 | 455.30 | radiation | 1.0 | 270 | < th | dose independent | sin | 7 | NA |
| 21 | 455.40 | radiation | 1.0 | 270 | > th | dose independent | sin | 7 | NA |
| 32 | 459.45 | humidity | 90.0 | 90 | < th | dose independent | rect. | 6 | 8 |
| 37 | 460.65 | humidity | 90.0 | 10 | < th | dose independent | rect. | 6 | 8 |
| 73 | 466.57 | humidity | 90.0 | 30 | < th | dose independent | rect. | 21 | 17 |
| 85 | 468.61 | humidity | 80.0 | 10 | > th | dose dependent | sin | 4 | NA |
| 96 | 470.60 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 7 |
| 108 | 470.83 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 114 | 471.02 | radiation | 1.0 | 270 | > th | dose independent | rect. | 18 | 18 |
| 148 | 472.36 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 157 | 473.32 | temperature | 15.0 | 270 | > th | dose independent | rect. | 4 | 8 |
| 187 | 475.92 | humidity | 90.0 | 30 | < th | dose independent | sin | 5 | NA |
| 226 | 477.90 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 6 |
| 269 | 478.95 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 17 |
| 303 | 480.88 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 7 |
| 321 | 481.49 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 8 |
| 329 | 481.72 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 8 |
| 331 | 481.77 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 8 |
| 332 | 481.77 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 8 |
| 333 | 481.78 | radiation | 20.0 | 270 | < th | dose independent | rect. | 16 | 8 |
| 368 | 482.36 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 16 | 8 |
| 369 | 482.38 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 24 | 8 |
| 389 | 482.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 8 |
| 390 | 482.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 8 |
| 392 | 483.09 | wind | 1.0 | 270 | > th | dose independent | rect. | 24 | 17 |
| 400 | 483.26 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 8 |
| 402 | 483.26 | temperature | 10.0 | 270 | > th | dose independent | rect. | 24 | 16 |
| 403 | 483.26 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 16 |
| 407 | 483.31 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 16 |
| 428 | 483.83 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 8 |
| 429 | 483.88 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 16 |
| 440 | 484.33 | humidity | 90.0 | 30 | > th | dose independent | sin | 5 | NA |
| 444 | 484.44 | humidity | 90.0 | 90 | < th | dose independent | rect. | 6 | 19 |
| 454 | 484.67 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 8 |
| 455 | 484.67 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 8 |
| 456 | 484.67 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 16 |
| 457 | 484.68 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 1 | 7 |
| 463 | 484.78 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 8 |
| 509 | 485.82 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 16 |
| 514 | 485.96 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 8 |
| 557 | 486.70 | wind | 1.0 | 270 | > th | dose independent | rect. | 16 | 8 |
| 619 | 487.93 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 16 |
| 620 | 487.93 | humidity | 90.0 | 10 | < th | dose independent | rect. | 6 | 19 |
| 635 | 488.18 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 7 |
| 658 | 488.59 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 5 |
| 708 | 489.34 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 16 |
| 709 | 489.34 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 16 |
| 724 | 489.66 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 18 |
| 726 | 489.66 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 761 | 490.36 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 16 |
| 762 | 490.36 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 16 |
| 817 | 491.51 | temperature | 15.0 | 270 | > th | dose independent | rect. | 18 | 17 |
| 819 | 491.53 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 6 |
| 820 | 491.53 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 6 |
| 821 | 491.53 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 6 |
| 824 | 491.53 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 6 |
| 825 | 491.53 | radiation | 20.0 | 270 | < th | dose independent | rect. | 23 | 6 |
| 846 | 491.56 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 6 |
| 870 | 491.95 | humidity | 90.0 | 30 | > th | dose independent | rect. | 24 | 14 |
| 873 | 491.96 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 6 |
| 895 | 492.27 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 16 |
| 896 | 492.27 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 16 |
| 907 | 492.47 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 18 |
| 924 | 492.69 | wind | 1.0 | 270 | > th | dose independent | rect. | 24 | 5 |
| 946 | 492.94 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 17 |
| 953 | 492.98 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 23 | 6 |