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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0501900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.83 (0.0386) R2 : 0.11
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.81 (0.244) R2dE : 0.109 R2E : 0.11
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.027 (0.0817) R2dN8 : 0.000281 R2N8 : 0.00142
σ : 0.723
deviance : 241.21
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1000
memory length : 7
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
231.36 0.715 3.12 -1.41 0.152 10.4 0.29 -50.7 -0.000502 3.31 1000 11 -- --
237.66 0.724 2.82 0.268 0.16 1.71 0.357 -- 0.000135 3.04 1000 11 -- --
231.6 0.709 3.12 -1.42 0.154 10.4 -- -50.6 -0.00132 2.94 1000 11 -- --
237.85 0.718 2.83 0.264 0.158 1.76 -- -- -0.00417 2.78 1000 7 -- --
232.95 0.711 3.13 -1.45 -- 10.6 -- -51.8 0.00164 -- 1000 11 -- --
264.17 0.762 2.84 0.417 0.145 -- 0.319 -- -0.0579 3.01 -- -- -- --
264.5 0.762 2.84 0.41 0.146 -- -- -- -0.0597 2.72 -- -- -- --
239.31 0.72 2.83 0.273 -- 1.76 -- -- -0.000453 -- 1000 7 -- --
239.6 0.721 2.83 -- 0.167 1.76 -- -- -0.0279 2.75 1000 7 -- --
265.74 0.762 2.84 0.416 -- -- -- -- -0.056 -- -- -- -- --
268.93 0.767 2.85 -- 0.154 -- -- -- -0.105 2.75 -- -- -- --
241.21 0.723 2.83 -- -- 1.81 -- -- -0.027 -- 1000 7 -- --
270.31 0.767 2.85 -- -- -- -- -- -0.102 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 220.73 atmosphere 1000 10 < th dose dependent rect. 17 15
13 223.46 atmosphere 1000 10 < th dose dependent rect. 23 9
31 224.89 atmosphere 1000 10 < th dose dependent rect. 23 20
37 225.14 atmosphere 1000 90 < th dose independent rect. 22 9
42 225.52 atmosphere 1000 10 < th dose dependent sin 11 NA
54 226.24 atmosphere 1000 10 < th dose independent rect. 23 8
59 226.30 atmosphere 1000 270 < th dose independent rect. 13 17
64 226.52 atmosphere 1000 270 < th dose independent sin 13 NA
70 226.70 atmosphere 1000 10 < th dose dependent rect. 17 21
86 227.21 atmosphere 1000 30 < th dose independent rect. 23 20
93 227.30 atmosphere 1000 270 < th dose independent rect. 20 9
94 227.31 atmosphere 1000 10 < th dose dependent rect. 12 20
102 227.36 atmosphere 1000 90 < th dose independent rect. 16 15
108 227.48 atmosphere 1000 270 > th dose independent sin 13 NA
199 229.28 atmosphere 1000 10 < th dose independent rect. 13 19
276 230.00 atmosphere 1000 10 < th dose independent rect. 16 16
377 231.27 atmosphere 1000 270 < th dose independent rect. 20 21
402 231.46 atmosphere 1000 1440 < th dose dependent rect. 23 1
429 231.71 atmosphere 1000 1440 < th dose independent rect. 23 2
430 231.71 atmosphere 1000 720 < th dose independent rect. 19 5
435 231.78 atmosphere 1000 1440 < th dose independent rect. 22 4
446 231.90 atmosphere 1000 1440 > th dose independent rect. 22 4
450 231.92 atmosphere 1000 10 < th dose independent sin 10 NA
455 231.94 atmosphere 1000 10 < th dose dependent rect. 23 5
461 232.00 atmosphere 1000 10 > th dose independent sin 10 NA
509 232.37 atmosphere 1000 1440 > th dose independent rect. 1 1
511 232.39 atmosphere 1000 90 < th dose independent rect. 16 23
545 232.57 atmosphere 1000 10 < th dose dependent no NA NA
565 232.68 atmosphere 1000 10 < th dose dependent rect. 3 23
596 232.90 atmosphere 1000 10 < th dose dependent rect. 7 23
598 232.92 atmosphere 1000 10 < th dose independent rect. 16 23
603 232.93 atmosphere 1000 10 < th dose dependent rect. 5 23
655 233.25 atmosphere 1000 30 < th dose dependent rect. 1 23
665 233.34 atmosphere 1000 270 < th dose independent rect. 23 1
761 233.96 atmosphere 1000 270 < th dose independent no NA NA
764 233.99 atmosphere 1000 30 < th dose independent rect. 23 15
782 234.18 atmosphere 1000 270 > th dose independent no NA NA
800 234.34 atmosphere 1000 10 < th dose independent rect. 23 5
830 234.58 atmosphere 1000 10 < th dose dependent rect. 23 15
836 234.62 atmosphere 1000 10 < th dose dependent rect. 24 3
841 234.65 temperature 30 4320 > th dose dependent rect. 10 3
843 234.66 temperature 30 4320 > th dose dependent rect. 15 21
903 234.86 temperature 30 4320 > th dose dependent sin 7 NA
935 235.04 temperature 30 4320 > th dose independent rect. 17 18
938 235.04 atmosphere 1000 90 < th dose dependent rect. 22 15
944 235.07 atmosphere 1000 10 > th dose independent no NA NA
946 235.07 atmosphere 1000 10 < th dose independent no NA NA
989 235.17 atmosphere 1000 30 < th dose independent rect. 5 23
996 235.19 temperature 30 4320 < th dose independent rect. 17 18