Os08g0501500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : EGF domain containing protein.
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Os08g0501500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : EGF domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 131.09 | 0.538 | 6.43 | -0.939 | 0.285 | -1.55 | -0.451 | -1.01 | 0.0889 | 2.19 | 23.7 | 299 | -- | -- |
| 132.08 | 0.535 | 6.44 | -1.08 | 0.271 | -1.48 | -0.615 | -- | 0.0752 | 2.38 | 23.27 | 311 | -- | -- |
| 131.28 | 0.534 | 6.42 | -0.903 | 0.299 | -1.71 | -- | -1.48 | 0.103 | 2.14 | 23.1 | 283 | -- | -- |
| 133.53 | 0.538 | 6.44 | -1.06 | 0.265 | -1.47 | -- | -- | 0.0814 | 2.13 | 23.26 | 313 | -- | -- |
| 135.51 | 0.542 | 6.42 | -0.899 | -- | -1.61 | -- | -1.17 | 0.119 | -- | 23.1 | 363 | -- | -- |
| 157.99 | 0.589 | 6.39 | -0.734 | 0.165 | -- | -0.551 | -- | 0.294 | 1.5 | -- | -- | -- | -- |
| 159.14 | 0.591 | 6.39 | -0.715 | 0.167 | -- | -- | -- | 0.298 | 0.64 | -- | -- | -- | -- |
| 136.4 | 0.544 | 6.44 | -1.05 | -- | -1.35 | -- | -- | 0.076 | -- | 23.53 | 510 | -- | -- |
| 159.95 | 0.589 | 6.4 | -- | 0.225 | -0.962 | -- | -- | 0.259 | 2.28 | 23.5 | 292 | -- | -- |
| 160.88 | 0.593 | 6.39 | -0.709 | -- | -- | -- | -- | 0.301 | -- | -- | -- | -- | -- |
| 172.62 | 0.615 | 6.37 | -- | 0.156 | -- | -- | -- | 0.378 | 0.421 | -- | -- | -- | -- |
| 162.04 | 0.593 | 6.4 | -- | -- | -0.913 | -- | -- | 0.258 | -- | 23.48 | 433 | -- | -- |
| 174.15 | 0.616 | 6.37 | -- | -- | -- | -- | -- | 0.379 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.75 | temperature | 25.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 3 | 130.24 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 6 | 130.37 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 9 | 130.45 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 22 | 14 |
| 14 | 130.52 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 16 | 130.64 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 25 | 130.82 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 27 | 130.88 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 45 | 131.24 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 48 | 131.27 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 22 | 9 |
| 56 | 131.44 | temperature | 10.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 60 | 131.50 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 97 | 132.05 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 114 | 132.14 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 17 | 21 |
| 136 | 132.31 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 144 | 132.37 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 162 | 132.49 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 194 | 132.63 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 216 | 132.75 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 237 | 132.92 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 253 | 132.96 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 259 | 132.99 | wind | 3.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 262 | 133.00 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 311 | 133.24 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 320 | 133.29 | wind | 3.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 382 | 133.50 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 396 | 133.58 | wind | 3.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 403 | 133.60 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 428 | 133.69 | wind | 3.0 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 463 | 133.86 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 582 | 134.25 | wind | 3.0 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 584 | 134.26 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 587 | 134.26 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 653 | 134.48 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 676 | 134.53 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 677 | 134.53 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 678 | 134.53 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 699 | 134.63 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 19 |
| 796 | 134.89 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 876 | 135.15 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 19 |
| 880 | 135.16 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 898 | 135.22 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 905 | 135.24 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 956 | 135.36 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 970 | 135.38 | temperature | 25.0 | 720 | < th | dose dependent | sin | 12 | NA |
| 992 | 135.42 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |