Os08g0501300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0501300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 179.09 | 0.629 | 7.39 | -0.13 | 2.34 | 2.32 | -1.57 | 0.439 | -0.696 | 20.5 | 23.47 | 19 | -- | -- |
| 179.19 | 0.623 | 7.39 | -0.189 | 2.34 | 2.36 | -1.61 | -- | -0.71 | 20.5 | 23.55 | 18 | -- | -- |
| 186.54 | 0.636 | 7.38 | 0.0166 | 2.35 | 2.2 | -- | 1.12 | -0.673 | 20.4 | 23.17 | 18 | -- | -- |
| 187.31 | 0.637 | 7.39 | -0.136 | 2.35 | 2.3 | -- | -- | -0.711 | 20.5 | 23.42 | 18 | -- | -- |
| 349.48 | 0.871 | 7.4 | -0.795 | -- | 3.3 | -- | -3.2 | -0.953 | -- | 23.87 | 493 | -- | -- |
| 267.99 | 0.767 | 7.32 | 0.266 | 2.62 | -- | -0.87 | -- | -0.384 | 19.1 | -- | -- | -- | -- |
| 269.93 | 0.769 | 7.32 | 0.285 | 2.62 | -- | -- | -- | -0.385 | 19.1 | -- | -- | -- | -- |
| 353.61 | 0.876 | 7.34 | -0.343 | -- | 3.11 | -- | -- | -0.781 | -- | 23.87 | 459 | -- | -- |
| 187.76 | 0.638 | 7.39 | -- | 2.35 | 2.27 | -- | -- | -0.687 | 20.4 | 23.52 | 18 | -- | -- |
| 631.43 | 1.17 | 7.26 | 0.235 | -- | -- | -- | -- | -0.432 | -- | -- | -- | -- | -- |
| 272.07 | 0.772 | 7.33 | -- | 2.62 | -- | -- | -- | -0.417 | 19.1 | -- | -- | -- | -- |
| 356.42 | 0.879 | 7.33 | -- | -- | 3.05 | -- | -- | -0.717 | -- | 24.09 | 457 | -- | -- |
| 632.88 | 1.17 | 7.27 | -- | -- | -- | -- | -- | -0.458 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 167.48 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 9 | 174.74 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 27 | 177.79 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 42 | 179.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 49 | 179.30 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 51 | 179.40 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 65 | 179.80 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 72 | 180.06 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 85 | 180.59 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 97 | 181.22 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 100 | 181.25 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 102 | 181.27 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 114 | 181.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 156 | 182.21 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 237 | 183.40 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 240 | 183.42 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 20 |
| 245 | 183.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 262 | 183.94 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 285 | 184.37 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 362 | 185.38 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 12 |
| 371 | 185.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 416 | 186.18 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 425 | 186.33 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 487 | 186.96 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 11 |
| 488 | 186.98 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 497 | 187.14 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 593 | 188.18 | temperature | 25 | 270 | < th | dose independent | sin | 3 | NA |
| 634 | 188.65 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 19 |
| 675 | 189.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 729 | 189.87 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 16 |
| 733 | 189.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 16 |