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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0501000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0399) R2 : 0.0149
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.221 (0.0841) R2dN8 : 0.0192 R2N8 : 0.0149
σ : 0.752
deviance : 259.52
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
248.86 0.741 3.08 0.0783 0.116 0.468 -0.257 2.1 -0.142 0.175 1013 540 -- --
250.91 0.738 3.09 0.0242 0.123 0.629 -0.128 -- -0.0976 24 1008 350 -- --
249.12 0.735 3.08 0.0803 0.115 0.479 -- 1.99 -0.14 0.388 1013 521 -- --
250.92 0.738 3.09 0.0238 0.126 0.636 -- -- -0.0949 0.914 1008 349 -- --
249.95 0.736 3.08 0.0828 -- 0.51 -- 1.91 -0.131 -- 1012 535 -- --
258.11 0.753 3.12 0.0611 0.139 -- -0.113 -- -0.215 0.0156 -- -- -- --
258.17 0.752 3.12 0.0655 0.139 -- -- -- -0.215 0.0907 -- -- -- --
251.88 0.739 3.08 0.029 -- 0.646 -- -- -0.0854 -- 1008 418 -- --
250.94 0.738 3.09 -- 0.126 0.637 -- -- -0.0974 0.945 1008 348 -- --
259.39 0.753 3.11 0.0699 -- -- -- -- -0.213 -- -- -- -- --
258.28 0.752 3.12 -- 0.14 -- -- -- -0.222 0.117 -- -- -- --
251.9 0.739 3.09 -- -- 0.646 -- -- -0.0889 -- 1008 418 -- --
259.52 0.752 3.12 -- -- -- -- -- -0.221 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 242.82 atmosphere 1010 90 < th dose dependent rect. 18 15
2 242.86 atmosphere 1010 10 < th dose dependent rect. 18 15
10 243.38 atmosphere 1010 90 < th dose dependent rect. 18 17
19 243.64 atmosphere 1010 270 < th dose dependent rect. 16 16
38 244.55 atmosphere 1010 720 < th dose dependent rect. 17 9
44 244.66 atmosphere 995 720 > th dose dependent rect. 19 5
46 244.68 atmosphere 995 270 > th dose dependent rect. 19 11
112 245.58 atmosphere 995 10 > th dose dependent rect. 20 22
113 245.60 atmosphere 1005 720 > th dose independent rect. 19 5
122 245.73 atmosphere 1010 720 < th dose dependent sin 15 NA
136 245.88 temperature 20 10 < th dose dependent rect. 6 2
149 245.96 temperature 15 10 > th dose dependent rect. 18 10
150 245.97 temperature 20 10 < th dose dependent rect. 4 4
153 245.97 atmosphere 995 720 > th dose dependent rect. 12 18
155 245.98 temperature 15 270 > th dose dependent rect. 16 10
196 246.28 atmosphere 1005 10 < th dose independent rect. 2 7
211 246.39 atmosphere 1005 10 < th dose independent rect. 24 9
215 246.40 atmosphere 1015 10 < th dose dependent rect. 18 10
235 246.50 temperature 15 10 > th dose dependent rect. 18 14
236 246.50 temperature 15 90 > th dose dependent rect. 18 15
266 246.62 atmosphere 1005 90 < th dose independent rect. 1 8
277 246.65 temperature 15 90 > th dose dependent rect. 18 9
297 246.70 atmosphere 995 720 > th dose dependent sin 15 NA
335 246.83 temperature 15 270 > th dose dependent rect. 16 16
338 246.85 atmosphere 1000 90 > th dose independent rect. 21 10
360 246.90 atmosphere 1005 270 < th dose independent rect. 3 2
365 246.91 atmosphere 1005 270 < th dose independent rect. 1 5
378 246.95 atmosphere 1005 90 < th dose independent rect. 3 5
423 247.10 atmosphere 1015 720 < th dose dependent rect. 23 3
427 247.11 atmosphere 995 270 > th dose dependent sin 11 NA
430 247.12 atmosphere 1000 270 > th dose independent rect. 19 11
495 247.30 atmosphere 1005 90 > th dose independent rect. 20 13
506 247.32 atmosphere 1015 720 < th dose dependent rect. 1 1
580 247.49 temperature 30 270 < th dose dependent rect. 17 12
624 247.56 atmosphere 995 10 > th dose dependent rect. 23 19
648 247.61 atmosphere 1015 10 < th dose dependent rect. 18 22
651 247.62 temperature 30 90 < th dose dependent rect. 21 10
658 247.63 atmosphere 995 720 > th dose dependent rect. 12 13
668 247.65 atmosphere 1005 10 < th dose independent sin 6 NA
681 247.67 temperature 20 270 < th dose dependent rect. 2 1
692 247.69 atmosphere 1005 30 > th dose independent rect. 20 15
730 247.75 atmosphere 1005 270 < th dose independent rect. 15 17
737 247.76 atmosphere 1005 270 > th dose independent rect. 11 21
756 247.79 atmosphere 1005 720 < th dose independent rect. 16 10
770 247.80 atmosphere 995 90 > th dose dependent rect. 3 22
772 247.81 radiation 1 10 < th dose dependent rect. 5 2
852 247.93 temperature 25 720 < th dose dependent rect. 18 1
881 247.97 temperature 25 270 > th dose independent rect. 16 16
892 247.98 atmosphere 1005 30 > th dose independent rect. 23 12
912 248.00 temperature 25 270 > th dose dependent rect. 17 16
918 248.01 temperature 25 720 < th dose dependent rect. 18 3
976 248.09 atmosphere 995 1440 > th dose independent rect. 18 13
984 248.10 temperature 20 10 < th dose independent rect. 4 5