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Os08g0500700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Heat shock protein 82.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.9 (0.0292) R2 : 0.733
β1 : 0.987 (0.107) R2dD : 0.0476 R2D : -0.0172
β2 : 2.79 (0.0885) R2dC : 0.938 R2C : 0.281
β3 : -2.26 (0.134) R2dE : 0.281 R2E : -0.339
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.683 (0.0629) R2dN8 : 0.0961 R2N8 : 0.065
σ : 0.544
deviance : 136.51
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C
peak time of C : 10.5
E
wheather : temperature
threshold : 32.7
memory length : 17
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.97
open length of G : 13.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
134.19 0.544 14.9 0.941 2.65 -2.17 1.35 -0.825 0.662 10.5 31.54 12 2.43 13.5
133.38 0.538 14.9 0.981 2.78 -2.2 0.795 -- 0.681 10.5 32.93 18 1.98 13.8
137.63 0.546 14.9 0.939 2.79 -2.15 -- 0.526 0.681 10.5 32.98 15 2.17 13.7
136.51 0.544 14.9 0.987 2.79 -2.26 -- -- 0.683 10.5 32.7 17 1.97 13.9
415.49 0.955 15 1.06 -- -1.31 -- -1.05 0.687 -- 26.22 11 1.82 14
185.68 0.639 14.9 1.13 1.97 -- 1.53 -- 0.829 12 -- -- -- --
195.78 0.655 14.9 1.19 1.97 -- -- -- 0.835 11.9 -- -- -- --
417.4 0.956 15 0.98 -- -1.22 -- -- 0.671 -- 26.22 11 1.82 14
159.48 0.588 14.9 -- 2.7 -2.25 -- -- 0.586 10.5 31.28 46 1.83 13.8
439.68 0.98 14.9 1.13 -- -- -- -- 0.809 -- -- -- -- --
233.28 0.714 14.9 -- 1.95 -- -- -- 0.702 11.9 -- -- -- --
441.1 0.978 15 -- -- -1.46 -- -- 0.561 -- 25.91 16 1.18 16.7
473.51 1.02 15 -- -- -- -- -- 0.683 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 136.44 temperature 30.0 10 < th dose dependent rect. 2 13
9 138.40 temperature 10.0 10 > th dose dependent rect. 6 20
12 138.98 temperature 15.0 30 > th dose dependent rect. 6 11
62 144.43 temperature 15.0 10 > th dose dependent sin 3 NA
79 145.40 temperature 30.0 10 < th dose dependent sin 3 NA
103 146.42 temperature 10.0 720 > th dose dependent rect. 5 2
113 146.93 temperature 20.0 90 > th dose independent rect. 5 12
184 149.88 temperature 20.0 10 > th dose dependent rect. 6 8
185 149.93 temperature 20.0 90 > th dose dependent rect. 5 6
213 150.97 radiation 20.0 10 < th dose dependent rect. 13 17
227 151.38 temperature 25.0 90 < th dose independent rect. 2 13
231 151.49 temperature 25.0 90 < th dose independent rect. 2 15
258 152.30 radiation 20.0 10 < th dose dependent rect. 10 20
260 152.39 radiation 1.0 90 < th dose dependent sin 2 NA
266 152.55 wind 5.0 90 < th dose independent rect. 17 13
273 152.69 temperature 20.0 720 > th dose independent rect. 5 2
286 153.12 radiation 10.0 90 < th dose dependent rect. 2 13
289 153.19 atmosphere 1015.0 1440 < th dose independent rect. 3 4
290 153.19 temperature 20.0 10 > th dose dependent rect. 6 6
291 153.20 temperature 25.0 90 > th dose independent rect. 5 6
293 153.25 wind 7.0 270 < th dose independent rect. 15 13
310 153.56 wind 9.0 720 < th dose independent rect. 7 22
316 153.63 wind 7.0 720 < th dose independent rect. 17 2
322 153.67 radiation 10.0 30 < th dose dependent rect. 2 18
334 153.81 radiation 10.0 30 < th dose dependent rect. 7 23
345 154.00 temperature 15.0 720 > th dose independent rect. 19 22
354 154.16 wind 7.0 720 < th dose independent rect. 17 11
372 154.34 temperature 25.0 10 > th dose independent rect. 6 8
388 154.46 radiation 1.0 90 < th dose independent sin 2 NA
415 154.69 radiation 1.0 90 < th dose independent rect. 2 17
416 154.70 radiation 1.0 90 > th dose independent sin 2 NA
425 154.84 wind 9.0 90 < th dose dependent rect. 6 11
478 155.19 radiation 10.0 30 < th dose dependent no NA NA
495 155.26 wind 9.0 90 < th dose dependent rect. 17 13
496 155.27 radiation 10.0 30 < th dose dependent rect. 15 23
503 155.32 temperature 20.0 270 > th dose independent rect. 4 20
509 155.38 temperature 25.0 30 > th dose independent sin 3 NA
514 155.43 radiation 10.0 90 < th dose dependent rect. 23 22
515 155.44 radiation 10.0 30 < th dose independent rect. 12 18
554 155.79 temperature 10.0 90 > th dose dependent rect. 21 14
557 155.82 wind 9.0 10 < th dose dependent rect. 16 14
566 155.85 wind 5.0 10 < th dose independent rect. 2 4
573 155.89 radiation 10.0 30 < th dose dependent rect. 17 23
605 156.09 atmosphere 1010.0 720 < th dose independent rect. 5 2
619 156.17 atmosphere 1000.0 10 > th dose dependent rect. 2 4
629 156.22 radiation 1.0 90 < th dose independent rect. 2 15
649 156.34 precipitation 0.1 10 < th dose independent rect. 2 4
651 156.34 precipitation 0.1 10 < th dose dependent rect. 2 4
652 156.35 humidity 90.0 10 < th dose independent rect. 6 12
661 156.42 wind 1.0 720 > th dose independent rect. 17 2
696 156.62 humidity 50.0 720 > th dose dependent rect. 5 2
706 156.69 temperature 15.0 270 > th dose independent rect. 3 22
757 156.91 radiation 30.0 10 < th dose dependent rect. 2 4
766 156.97 temperature 15.0 720 > th dose independent rect. 7 22
775 157.01 radiation 1.0 90 > th dose independent rect. 5 12
776 157.01 temperature 15.0 10 > th dose independent rect. 6 20
797 157.08 temperature 20.0 30 > th dose dependent rect. 20 21
798 157.09 wind 5.0 270 < th dose independent rect. 1 2
802 157.12 temperature 25.0 30 < th dose independent sin 3 NA
827 157.23 temperature 10.0 10 > th dose independent rect. 2 4
829 157.23 temperature 30.0 10 < th dose independent rect. 2 4
830 157.23 humidity 50.0 10 > th dose independent rect. 2 4
833 157.23 atmosphere 995.0 10 > th dose independent rect. 2 4
834 157.23 atmosphere 1010.0 10 < th dose independent rect. 2 4
836 157.23 radiation 20.0 10 < th dose independent rect. 2 4
860 157.31 wind 9.0 720 < th dose independent rect. 1 18
876 157.38 precipitation 0.1 270 < th dose independent rect. 15 13
877 157.38 precipitation 0.1 270 < th dose dependent rect. 15 13
919 157.49 humidity 80.0 720 > th dose independent rect. 5 2
927 157.54 wind 9.0 10 < th dose independent rect. 6 20
934 157.58 wind 9.0 10 < th dose dependent rect. 2 4
935 157.59 atmosphere 1015.0 10 < th dose independent rect. 6 20
940 157.62 wind 9.0 1440 < th dose independent rect. 3 4
941 157.62 temperature 10.0 1440 > th dose independent rect. 3 4
944 157.62 temperature 30.0 1440 < th dose independent rect. 3 4
948 157.62 humidity 50.0 1440 > th dose independent rect. 3 4
953 157.62 atmosphere 995.0 1440 > th dose independent rect. 3 4
954 157.62 radiation 40.0 1440 < th dose independent rect. 3 4
959 157.62 temperature 10.0 1440 > th dose independent rect. 7 20