Os08g0500600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os08g0500600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 105.15 | 0.482 | 6.27 | 1.66 | 2.53 | -1.1 | 1.11 | 0.348 | -0.0886 | 20.3 | 29.99 | 384 | -- | -- |
| 105.33 | 0.478 | 6.27 | 1.66 | 2.53 | -1.11 | 1.11 | -- | -0.0901 | 20.3 | 29.93 | 384 | -- | -- |
| 108.97 | 0.486 | 6.27 | 1.63 | 2.53 | -1.1 | -- | 0.389 | -0.0902 | 20.3 | 29.93 | 383 | -- | -- |
| 109.18 | 0.487 | 6.27 | 1.63 | 2.53 | -1.11 | -- | -- | -0.0846 | 20.3 | 29.99 | 383 | -- | -- |
| 177.13 | 0.62 | 6.23 | 1.58 | -- | -3.78 | -- | 2.63 | -0.0557 | -- | 2.03 | 913 | -- | -- |
| 124.44 | 0.523 | 6.26 | 1.7 | 2.8 | -- | 1.17 | -- | 0.00316 | 19.6 | -- | -- | -- | -- |
| 128.27 | 0.53 | 6.26 | 1.67 | 2.8 | -- | -- | -- | 0.00541 | 19.6 | -- | -- | -- | -- |
| 156.3 | 0.582 | 6.25 | 1.52 | -- | -3.82 | -- | -- | -0.216 | -- | 1.87 | 923 | -- | -- |
| 175.52 | 0.617 | 6.27 | -- | 2.5 | -1.16 | -- | -- | -0.14 | 20.3 | 30.01 | 426 | -- | -- |
| 548.79 | 1.09 | 6.19 | 1.64 | -- | -- | -- | -- | -0.0368 | -- | -- | -- | -- | -- |
| 202.19 | 0.665 | 6.3 | -- | 2.78 | -- | -- | -- | -0.181 | 19.7 | -- | -- | -- | -- |
| 206.87 | 0.67 | 6.27 | -- | -- | -4.13 | -- | -- | -0.385 | -- | 1.719 | 943 | -- | -- |
| 619.37 | 1.16 | 6.23 | -- | -- | -- | -- | -- | -0.218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.63 | radiation | 40.0 | 270 | < th | dose independent | rect. | 6 | 16 |
| 3 | 102.90 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 7 |
| 5 | 103.69 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 9 |
| 8 | 103.79 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 11 | 104.01 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 6 | 16 |
| 21 | 104.52 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 7 |
| 39 | 105.31 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 21 |
| 40 | 105.33 | wind | 7.0 | 270 | < th | dose independent | rect. | 10 | 8 |
| 45 | 105.46 | wind | 7.0 | 270 | < th | dose independent | rect. | 11 | 17 |
| 52 | 105.59 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 22 |
| 68 | 105.95 | wind | 9.0 | 270 | < th | dose dependent | rect. | 10 | 8 |
| 72 | 106.02 | radiation | 30.0 | 270 | < th | dose independent | rect. | 17 | 18 |
| 85 | 106.16 | radiation | 30.0 | 270 | < th | dose independent | rect. | 18 | 16 |
| 86 | 106.17 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 16 | 8 |
| 88 | 106.18 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 19 |
| 97 | 106.27 | temperature | 15.0 | 270 | > th | dose independent | rect. | 18 | 15 |
| 100 | 106.30 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 17 |
| 110 | 106.42 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 10 | 8 |
| 111 | 106.42 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 10 | 19 |
| 154 | 106.76 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 5 | 8 |
| 164 | 106.85 | radiation | 40.0 | 270 | < th | dose independent | rect. | 16 | 23 |
| 169 | 106.90 | radiation | 1.0 | 270 | > th | dose dependent | sin | 20 | NA |
| 173 | 106.95 | radiation | 40.0 | 270 | < th | dose independent | rect. | 16 | 21 |
| 206 | 107.39 | temperature | 20.0 | 10 | > th | dose independent | rect. | 5 | 8 |
| 212 | 107.44 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 17 | 18 |
| 220 | 107.52 | humidity | 60.0 | 90 | > th | dose independent | rect. | 6 | 17 |
| 229 | 107.56 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 16 |
| 275 | 107.71 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 5 | 16 |
| 284 | 107.79 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 18 | 16 |
| 302 | 107.90 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 16 | 21 |
| 329 | 108.10 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 22 | 7 |
| 333 | 108.11 | radiation | 40.0 | 270 | < th | dose dependent | sin | 21 | NA |
| 335 | 108.12 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 17 | 6 |
| 354 | 108.22 | radiation | 20.0 | 270 | > th | dose independent | rect. | 10 | 21 |
| 357 | 108.23 | radiation | 20.0 | 270 | > th | dose independent | rect. | 10 | 7 |
| 378 | 108.28 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 398 | 108.41 | temperature | 15.0 | 270 | > th | dose independent | rect. | 16 | 7 |
| 420 | 108.49 | temperature | 15.0 | 270 | > th | dose independent | rect. | 15 | 9 |
| 429 | 108.53 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 433 | 108.55 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 7 |
| 450 | 108.59 | radiation | 20.0 | 270 | < th | dose independent | sin | 19 | NA |
| 515 | 108.77 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 17 |
| 525 | 108.81 | radiation | 20.0 | 270 | > th | dose independent | sin | 20 | NA |
| 543 | 108.89 | radiation | 20.0 | 270 | < th | dose independent | rect. | 11 | 12 |
| 574 | 109.01 | wind | 7.0 | 270 | < th | dose independent | rect. | 23 | 17 |
| 645 | 109.13 | radiation | 40.0 | 270 | < th | dose independent | sin | 22 | NA |
| 694 | 109.23 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 17 |
| 701 | 109.24 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 11 | 12 |
| 723 | 109.32 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 17 |
| 729 | 109.33 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 10 | 6 |
| 736 | 109.36 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 6 |
| 746 | 109.39 | humidity | 60.0 | 90 | > th | dose independent | rect. | 6 | 7 |
| 803 | 109.50 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 7 |
| 804 | 109.50 | radiation | 20.0 | 270 | < th | dose independent | rect. | 14 | 9 |
| 821 | 109.51 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 22 | 8 |
| 826 | 109.53 | wind | 5.0 | 270 | < th | dose independent | rect. | 22 | 7 |
| 833 | 109.55 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 8 |
| 858 | 109.58 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 17 |
| 861 | 109.58 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 14 | 9 |
| 906 | 109.67 | humidity | 60.0 | 270 | > th | dose independent | rect. | 4 | 9 |
| 914 | 109.69 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 11 | 8 |
| 938 | 109.72 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 17 |
| 945 | 109.72 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 17 |
| 946 | 109.73 | humidity | 60.0 | 90 | > th | dose independent | rect. | 19 | 18 |
| 969 | 109.79 | radiation | 30.0 | 270 | < th | dose independent | no | NA | NA |