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Os08g0500300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein phosphatase 2C-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0158) R2 : 0.652
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.15 (0.0397) R2dC : 0.637 R2C : 0.638
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.13 (0.0333) R2dN8 : 0.015 R2N8 : 0.0159
σ : 0.298
deviance : 40.72
__
_____
C
peak time of C : 3.25
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.11 0.27 10.8 0.0481 0.76 0.505 -0.36 0.684 0.143 4.79 8.706 129 -- --
35.12 0.276 10.8 0.024 0.769 0.49 0.0843 -- 0.145 4.66 8.87 140 -- --
33.31 0.269 10.8 0.0298 0.743 0.511 -- 0.573 0.144 4.76 8.78 143 -- --
35.11 0.276 10.8 0.0274 0.736 0.525 -- -- 0.145 4.8 8.863 143 -- --
41.35 0.299 10.9 0.0423 -- 0.975 -- 0.651 0.137 -- 5.408 322 -- --
39.97 0.296 10.9 0.0456 1.14 -- 0.474 -- 0.137 3.19 -- -- -- --
40.68 0.299 10.9 0.036 1.15 -- -- -- 0.134 3.25 -- -- -- --
41.97 0.302 10.9 0.0707 -- 0.962 -- -- 0.179 -- 3.68 335 -- --
35.12 0.276 10.9 -- 0.734 0.526 -- -- 0.142 4.81 8.87 144 -- --
115.05 0.501 10.9 0.0846 -- -- -- -- 0.164 -- -- -- -- --
40.72 0.298 10.9 -- 1.15 -- -- -- 0.13 3.25 -- -- -- --
42.1 0.302 10.9 -- -- 0.962 -- -- 0.17 -- 3.67 335 -- --
115.24 0.501 10.9 -- -- -- -- -- 0.155 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.94 radiation 40.0 270 < th dose dependent rect. 11 19
2 30.24 radiation 20.0 270 < th dose independent rect. 11 19
26 31.25 radiation 10.0 270 < th dose independent rect. 1 15
40 31.37 radiation 20.0 270 < th dose dependent rect. 1 14
41 31.38 wind 1.0 270 > th dose independent rect. 11 10
42 31.38 atmosphere 1015.0 270 < th dose independent rect. 11 10
44 31.39 temperature 10.0 270 > th dose independent rect. 11 10
45 31.39 temperature 10.0 270 > th dose independent rect. 21 14
46 31.39 atmosphere 995.0 270 > th dose independent rect. 21 14
47 31.40 atmosphere 995.0 270 > th dose independent rect. 11 10
48 31.40 wind 9.0 270 < th dose independent rect. 21 14
59 31.57 wind 9.0 270 < th dose independent rect. 11 10
60 31.58 humidity 50.0 270 > th dose independent rect. 21 14
85 31.83 radiation 10.0 270 < th dose dependent rect. 22 23
111 32.14 precipitation 0.1 270 < th dose independent rect. 11 10
112 32.14 precipitation 0.1 270 < th dose dependent rect. 11 10
123 32.23 wind 5.0 270 < th dose independent rect. 1 5
124 32.23 radiation 20.0 10 < th dose independent rect. 2 10
125 32.23 precipitation 0.1 270 < th dose independent rect. 21 14
126 32.23 precipitation 0.1 270 < th dose dependent rect. 21 14
149 32.33 radiation 30.0 90 < th dose dependent rect. 3 13
154 32.36 precipitation 0.1 270 < th dose independent rect. 1 5
155 32.36 radiation 20.0 10 < th dose independent rect. 2 14
156 32.36 precipitation 0.1 270 < th dose dependent rect. 1 5
177 32.47 temperature 20.0 270 > th dose independent rect. 6 5
179 32.47 temperature 10.0 270 > th dose dependent rect. 6 5
184 32.49 wind 5.0 270 < th dose independent rect. 6 5
188 32.50 precipitation 0.1 270 < th dose independent rect. 6 19
189 32.50 precipitation 0.1 270 < th dose dependent rect. 6 19
193 32.52 precipitation 0.1 270 < th dose independent rect. 2 3
196 32.52 precipitation 0.1 270 < th dose dependent rect. 2 3
202 32.54 temperature 25.0 270 < th dose independent rect. 2 3
212 32.57 wind 5.0 270 < th dose independent rect. 2 3
214 32.57 atmosphere 995.0 270 > th dose independent rect. 11 19
221 32.57 temperature 10.0 10 > th dose dependent rect. 7 21
238 32.62 wind 9.0 270 < th dose dependent rect. 6 5
239 32.62 temperature 10.0 10 > th dose dependent rect. 7 19
243 32.63 radiation 10.0 90 < th dose independent rect. 2 21
244 32.63 radiation 10.0 270 < th dose independent rect. 24 21
252 32.67 temperature 10.0 270 > th dose independent rect. 1 5
254 32.67 temperature 30.0 270 < th dose independent rect. 1 5
255 32.67 humidity 50.0 270 > th dose independent rect. 1 5
258 32.67 atmosphere 995.0 270 > th dose independent rect. 1 5
259 32.67 atmosphere 1015.0 270 < th dose independent rect. 1 5
260 32.67 radiation 20.0 270 < th dose independent rect. 1 5
263 32.67 temperature 10.0 270 > th dose independent rect. 6 19
271 32.68 wind 9.0 270 < th dose dependent rect. 1 5
284 32.70 radiation 20.0 10 < th dose independent rect. 4 12
286 32.70 precipitation 0.1 270 < th dose independent rect. 5 21
289 32.70 precipitation 0.1 270 < th dose dependent rect. 5 21
298 32.73 radiation 40.0 270 < th dose dependent rect. 1 5
315 32.77 radiation 10.0 270 < th dose independent sin 9 NA
322 32.78 atmosphere 995.0 270 > th dose dependent rect. 1 5
332 32.81 wind 9.0 270 < th dose independent rect. 6 19
333 32.81 wind 9.0 270 < th dose dependent rect. 6 7
338 32.82 wind 5.0 270 < th dose independent rect. 6 7
346 32.83 radiation 20.0 90 < th dose dependent rect. 2 21
348 32.84 wind 7.0 30 < th dose dependent rect. 2 7
353 32.85 wind 9.0 270 < th dose dependent rect. 2 3
362 32.87 radiation 10.0 90 > th dose independent sin 3 NA
364 32.87 temperature 10.0 10 > th dose dependent rect. 9 17
369 32.88 temperature 10.0 270 > th dose independent rect. 2 3
372 32.88 humidity 50.0 270 > th dose independent rect. 2 3
375 32.88 atmosphere 995.0 270 > th dose independent rect. 2 3
376 32.88 atmosphere 1010.0 270 < th dose independent rect. 2 3
378 32.88 radiation 20.0 270 < th dose independent rect. 2 3
384 32.88 atmosphere 995.0 270 > th dose independent rect. 17 13
388 32.88 temperature 10.0 270 > th dose independent rect. 5 21
390 32.88 radiation 30.0 270 < th dose dependent rect. 2 3
395 32.89 radiation 1.0 270 < th dose independent rect. 2 3
398 32.89 radiation 10.0 270 < th dose dependent rect. 2 3
405 32.90 radiation 20.0 10 < th dose independent rect. 2 8
456 32.99 temperature 10.0 270 > th dose independent rect. 6 5
457 32.99 atmosphere 995.0 270 > th dose independent rect. 6 5
458 32.99 atmosphere 1015.0 270 < th dose independent rect. 6 5
459 32.99 precipitation 0.1 270 < th dose independent rect. 6 5
461 32.99 temperature 10.0 270 > th dose independent rect. 11 19
462 32.99 precipitation 0.1 270 < th dose dependent rect. 6 5
487 33.01 radiation 20.0 10 < th dose independent rect. 2 21
492 33.02 atmosphere 995.0 270 > th dose independent rect. 13 17
499 33.03 temperature 30.0 270 < th dose independent rect. 13 17
508 33.04 wind 9.0 270 < th dose independent rect. 11 19
510 33.04 radiation 10.0 90 > th dose independent rect. 16 22
511 33.04 radiation 10.0 270 < th dose dependent sin 4 NA
523 33.05 temperature 10.0 10 > th dose dependent rect. 7 7
535 33.07 radiation 20.0 270 < th dose dependent sin 7 NA
537 33.08 wind 1.0 270 > th dose independent rect. 1 5
538 33.08 humidity 50.0 270 > th dose independent rect. 6 5
546 33.09 wind 9.0 270 < th dose independent rect. 5 21
553 33.10 radiation 20.0 10 < th dose independent rect. 4 19
572 33.14 precipitation 0.1 10 < th dose independent rect. 2 7
578 33.14 precipitation 0.1 10 < th dose dependent rect. 2 7
588 33.16 temperature 10.0 270 > th dose dependent rect. 1 5
597 33.17 temperature 30.0 270 < th dose independent rect. 21 13
610 33.19 precipitation 0.1 270 < th dose independent rect. 11 19
614 33.19 precipitation 0.1 270 < th dose dependent rect. 11 19
619 33.20 temperature 30.0 270 < th dose independent rect. 15 15
620 33.20 atmosphere 995.0 270 > th dose dependent rect. 2 3
624 33.21 wind 7.0 270 < th dose independent rect. 17 13
647 33.23 atmosphere 995.0 270 > th dose dependent rect. 11 9
652 33.24 precipitation 0.1 270 < th dose independent rect. 17 13
659 33.24 precipitation 0.1 270 < th dose dependent rect. 17 13
675 33.26 wind 5.0 10 < th dose independent rect. 2 7
677 33.26 radiation 40.0 270 < th dose independent rect. 11 10
678 33.26 precipitation 0.1 270 < th dose independent rect. 6 11
683 33.26 precipitation 0.1 270 < th dose dependent rect. 6 11
693 33.28 humidity 50.0 270 > th dose independent rect. 14 16
694 33.28 radiation 10.0 270 > th dose independent rect. 16 19
701 33.29 radiation 1.0 90 > th dose dependent sin 5 NA
705 33.29 radiation 20.0 90 < th dose dependent rect. 13 23
731 33.33 temperature 20.0 270 > th dose independent rect. 6 7
741 33.34 wind 9.0 270 < th dose independent rect. 6 11
742 33.34 humidity 50.0 270 > th dose dependent rect. 2 3
752 33.35 radiation 30.0 10 < th dose dependent rect. 4 12
758 33.36 radiation 10.0 270 > th dose independent sin 6 NA
764 33.36 radiation 10.0 90 < th dose independent rect. 13 22
780 33.37 humidity 50.0 270 > th dose dependent rect. 1 5
789 33.38 wind 7.0 14400 > th dose dependent rect. 10 3
800 33.39 atmosphere 1015.0 270 < th dose independent rect. 11 19
807 33.40 radiation 20.0 10 < th dose independent sin 6 NA
809 33.40 wind 1.0 720 > th dose independent rect. 17 6
812 33.40 humidity 50.0 270 > th dose independent rect. 17 13
815 33.40 radiation 20.0 90 < th dose dependent no NA NA
825 33.41 temperature 10.0 270 > th dose independent rect. 6 11
826 33.41 atmosphere 1015.0 270 < th dose independent rect. 6 11
827 33.41 temperature 10.0 270 > th dose independent rect. 17 13
836 33.41 temperature 10.0 270 > th dose dependent rect. 20 15
842 33.42 radiation 20.0 10 < th dose dependent rect. 4 19
844 33.42 radiation 40.0 10 < th dose dependent rect. 12 21
858 33.44 radiation 1.0 270 > th dose independent rect. 6 5
896 33.49 wind 1.0 270 > th dose independent rect. 11 19
906 33.50 precipitation 0.1 30 < th dose independent rect. 9 17
918 33.50 precipitation 0.1 30 < th dose dependent rect. 9 17
921 33.51 wind 1.0 270 > th dose independent rect. 2 3
961 33.53 wind 1.0 270 > th dose independent rect. 6 5
964 33.53 wind 7.0 270 < th dose independent rect. 13 17