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Os08g0499900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine-rich repeat, cysteine-containing containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0122) R2 : 0.0622
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.141 (0.0256) R2dN8 : 0.0803 R2N8 : 0.0622
σ : 0.229
deviance : 24.1
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
12.09 0.163 10.8 0.515 0.031 -0.299 -0.467 -0.47 0.248 9.24 9.8 4392 -- --
12.29 0.163 10.8 0.542 0.0215 -0.255 -0.517 -- 0.234 9.29 9.8 4393 -- --
12.82 0.167 10.8 0.503 0.0446 -0.3 -- -0.524 0.242 7.16 9.861 4386 -- --
12.91 0.167 10.8 0.505 0.056 -0.225 -- -- 0.242 6.64 10.05 4382 -- --
12.9 0.167 10.8 0.504 -- -0.261 -- -0.442 0.251 -- 9.965 4396 -- --
14.24 0.177 10.9 0.604 0.0318 -- 0.404 -- 0.207 22.5 -- -- -- --
14.8 0.18 10.9 0.586 0.0525 -- -- -- 0.205 2.46 -- -- -- --
12.95 0.168 10.8 0.547 -- -0.235 -- -- 0.267 -- 10.32 4391 -- --
20.05 0.209 10.9 -- 0.0573 -0.329 -- -- 0.193 7.87 9.8 4382 -- --
14.97 0.181 10.9 0.588 -- -- -- -- 0.206 -- -- -- -- --
23.86 0.229 10.9 -- 0.0639 -- -- -- 0.14 2.61 -- -- -- --
20.1 0.209 10.9 -- -- -0.349 -- -- 0.2 -- 8.574 10840 -- --
24.1 0.229 10.9 -- -- -- -- -- 0.141 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 12.06 temperature 20.0 720 < th dose independent rect. 5 1
2 12.12 temperature 20.0 720 < th dose independent rect. 4 3
3 12.17 temperature 20.0 720 > th dose independent rect. 4 3
12 12.34 wind 9.0 4320 > th dose dependent rect. 13 17
17 12.35 wind 9.0 4320 > th dose dependent rect. 13 8
40 12.48 temperature 20.0 720 > th dose dependent rect. 1 6
44 12.49 radiation 20.0 1440 < th dose dependent rect. 6 4
46 12.49 wind 9.0 4320 > th dose dependent rect. 13 6
94 12.53 wind 9.0 4320 > th dose dependent rect. 12 2
102 12.55 wind 3.0 43200 < th dose independent rect. 11 2
126 12.57 wind 9.0 4320 > th dose independent rect. 15 1
127 12.57 wind 9.0 4320 > th dose independent rect. 13 8
128 12.57 wind 9.0 4320 > th dose independent rect. 13 18
136 12.58 humidity 80.0 1440 > th dose independent rect. 4 7
137 12.58 humidity 80.0 1440 > th dose independent rect. 2 9
138 12.58 radiation 10.0 4320 > th dose independent rect. 17 13
141 12.58 radiation 10.0 1440 < th dose dependent sin 7 NA
169 12.59 humidity 80.0 1440 < th dose independent rect. 4 7
173 12.59 wind 9.0 4320 > th dose dependent sin 17 NA
174 12.59 wind 9.0 4320 > th dose dependent rect. 15 1
211 12.61 radiation 10.0 4320 > th dose independent rect. 17 1
214 12.61 radiation 10.0 1440 < th dose independent rect. 7 3
239 12.61 wind 9.0 4320 > th dose dependent rect. 17 23
254 12.63 temperature 20.0 720 < th dose independent sin 9 NA
294 12.64 wind 9.0 4320 > th dose dependent rect. 3 18
296 12.64 wind 9.0 4320 > th dose dependent rect. 15 23
314 12.66 humidity 80.0 1440 > th dose independent rect. 9 1
315 12.66 precipitation 0.1 14400 < th dose independent rect. 13 1
336 12.66 precipitation 0.1 14400 < th dose dependent rect. 13 1
353 12.67 humidity 80.0 1440 < th dose independent rect. 9 1
363 12.67 wind 9.0 4320 < th dose independent rect. 13 20
366 12.67 radiation 1.0 1440 > th dose dependent rect. 5 5
381 12.67 wind 9.0 4320 > th dose dependent rect. 17 21
387 12.68 wind 9.0 4320 < th dose independent rect. 13 18
420 12.68 wind 9.0 4320 > th dose dependent rect. 20 23
426 12.69 wind 9.0 4320 < th dose independent rect. 13 8
430 12.69 wind 9.0 4320 < th dose independent rect. 13 16
433 12.69 wind 9.0 4320 > th dose dependent no NA NA
438 12.69 temperature 10.0 720 > th dose dependent rect. 1 6
459 12.70 wind 3.0 43200 > th dose independent rect. 12 1
473 12.70 wind 3.0 43200 < th dose dependent rect. 21 9
480 12.71 wind 9.0 4320 < th dose independent rect. 15 1
498 12.71 precipitation 0.1 14400 > th dose dependent rect. 13 1
569 12.73 humidity 80.0 1440 < th dose independent rect. 8 3
571 12.73 wind 9.0 4320 > th dose independent rect. 13 6
592 12.73 temperature 25.0 720 < th dose dependent rect. 3 3
597 12.73 wind 3.0 43200 < th dose dependent rect. 23 7
599 12.73 temperature 25.0 720 < th dose dependent rect. 23 8
629 12.73 wind 9.0 4320 > th dose dependent rect. 20 20
640 12.74 wind 9.0 4320 < th dose independent rect. 13 12
650 12.74 temperature 25.0 720 < th dose dependent rect. 4 1
653 12.74 precipitation 0.1 14400 > th dose dependent rect. 16 2
684 12.75 wind 9.0 4320 > th dose independent rect. 15 6
698 12.75 temperature 25.0 720 < th dose dependent rect. 1 5
710 12.76 wind 9.0 4320 > th dose independent sin 15 NA
711 12.76 radiation 10.0 4320 < th dose independent rect. 17 1
727 12.76 temperature 20.0 720 > th dose dependent sin 8 NA
746 12.77 wind 5.0 90 > th dose independent rect. 12 1
747 12.77 atmosphere 1005.0 14400 > th dose independent rect. 13 1
779 12.78 wind 9.0 4320 > th dose independent rect. 13 1
785 12.78 temperature 20.0 720 > th dose independent rect. 19 12
804 12.79 wind 9.0 4320 < th dose independent rect. 15 6
823 12.79 radiation 1.0 1440 > th dose dependent sin 10 NA
824 12.79 wind 3.0 43200 < th dose dependent rect. 11 2
833 12.79 wind 9.0 4320 > th dose dependent rect. 15 6
846 12.79 wind 3.0 43200 < th dose dependent rect. 23 14
850 12.80 temperature 20.0 720 > th dose independent sin 7 NA
852 12.80 wind 9.0 4320 < th dose independent rect. 13 1
854 12.80 atmosphere 1005.0 14400 < th dose independent rect. 13 1
855 12.80 precipitation 0.1 14400 > th dose independent rect. 13 1
862 12.80 radiation 10.0 4320 < th dose independent rect. 17 9
876 12.80 wind 3.0 90 > th dose dependent rect. 12 1
878 12.80 temperature 20.0 720 > th dose dependent rect. 1 1
921 12.81 radiation 10.0 4320 < th dose independent rect. 17 7
982 12.82 wind 9.0 4320 < th dose independent sin 14 NA
985 12.82 atmosphere 1005.0 14400 < th dose independent rect. 16 1