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Os08g0499300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WRKY transcription factor 30.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.82 (0.0435) R2 : 0.71
β1 : -1.93 (0.158) R2dD : 0.106 R2D : 0.0458
β2 : 2.87 (0.104) R2dC : 0.485 R2C : 0.44
β3 : -1.96 (0.151) R2dE : 0.116 R2E : 0.0254
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.12 (0.0951) R2dN8 : 0.12 R2N8 : 0.000433
σ : 0.806
deviance : 299.72
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C
peak time of C : 22.5
E
wheather : radiation
threshold : 20.6
memory length : 4334
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.9
open length of G : 1.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
292.7 0.804 7.82 -1.82 2.85 -2 -0.735 2.67 -1.11 22.5 20.05 4324 6.95 1.05
298.79 0.805 7.81 -1.87 2.85 -1.92 -0.55 -- -1.09 22.5 20.3 4330 6.89 1.12
294.42 0.799 7.82 -1.81 2.84 -2.01 -- 2.6 -1.11 22.5 20.23 4325 6.95 1.05
299.72 0.806 7.82 -1.93 2.87 -1.96 -- -- -1.12 22.5 20.6 4334 6.9 1.1
605.15 1.15 7.71 -1.66 -- -2.09 -- 2.72 -0.668 -- 1.59 3272 7.37 1.37
405.23 0.944 7.77 -2.15 2.82 -- -0.967 -- -0.81 22.3 -- -- -- --
408.99 0.947 7.77 -2.12 2.82 -- -- -- -0.808 22.4 -- -- -- --
469.72 1.01 7.81 -1.63 -- -4.27 -- -- -0.635 -- 1.32 3340 3.69 5.5
403.43 0.935 7.81 -- 2.89 -1.98 -- -- -1.02 22.4 20.2 4329 6.85 1.07
894.37 1.4 7.69 -2.07 -- -- -- -- -0.799 -- -- -- -- --
527.1 1.07 7.72 -- 2.81 -- -- -- -0.572 22.3 -- -- -- --
516.88 1.06 7.53 -- -- -4.87 -- -- -0.0722 -- 1.611 3344 3.42 5.98
1007.55 1.48 7.64 -- -- -- -- -- -0.569 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 293.59 radiation 20.0 4320 > th dose independent rect. 7 1
16 294.01 wind 1.0 43200 < th dose dependent rect. 23 7
20 297.39 wind 1.0 43200 < th dose independent rect. 19 11
23 298.42 radiation 20.0 4320 > th dose dependent rect. 7 1
25 299.05 humidity 70.0 1440 < th dose independent rect. 9 5
40 299.14 wind 1.0 43200 < th dose dependent rect. 18 13
43 299.49 humidity 70.0 1440 < th dose independent rect. 18 20
46 299.87 humidity 70.0 1440 > th dose independent rect. 19 19
48 300.18 wind 1.0 43200 < th dose dependent rect. 20 11
49 300.26 humidity 70.0 1440 > th dose independent rect. 9 5
51 300.66 humidity 80.0 43200 > th dose dependent rect. 11 2
62 302.67 wind 1.0 43200 < th dose dependent rect. 2 2
88 303.77 humidity 70.0 1440 > th dose independent rect. 2 12
89 303.80 humidity 70.0 1440 > th dose independent rect. 4 10
95 303.86 humidity 70.0 1440 > th dose independent rect. 22 16
106 304.45 radiation 10.0 1440 > th dose independent rect. 17 21
120 304.65 wind 1.0 43200 > th dose independent rect. 20 10
132 305.52 radiation 10.0 1440 > th dose independent rect. 5 9
152 305.69 radiation 10.0 1440 > th dose independent sin 6 NA
176 305.99 wind 5.0 43200 < th dose dependent rect. 1 3
178 306.04 radiation 1.0 43200 < th dose independent rect. 9 5
179 306.09 radiation 1.0 43200 > th dose independent rect. 9 5
182 306.27 temperature 25.0 43200 < th dose dependent rect. 11 1
186 306.56 wind 3.0 43200 > th dose dependent rect. 5 1
188 306.60 radiation 1.0 43200 > th dose independent rect. 8 7
190 306.62 radiation 1.0 43200 < th dose independent rect. 8 7
193 306.76 radiation 1.0 43200 < th dose dependent rect. 9 5
194 306.77 temperature 20.0 14400 > th dose independent rect. 24 21
200 306.91 temperature 20.0 14400 < th dose independent rect. 24 21
201 306.97 temperature 20.0 43200 > th dose independent rect. 7 15
206 307.06 humidity 70.0 1440 < th dose independent sin 4 NA
208 307.10 temperature 20.0 43200 < th dose independent rect. 7 15
210 307.21 temperature 20.0 43200 < th dose independent rect. 7 1
217 307.28 temperature 20.0 43200 > th dose independent rect. 7 1
219 307.30 wind 1.0 43200 < th dose independent rect. 2 2
222 307.34 temperature 20.0 43200 < th dose independent rect. 10 12
223 307.36 radiation 1.0 43200 < th dose dependent rect. 8 7
230 307.50 temperature 20.0 14400 > th dose independent rect. 24 1
231 307.50 temperature 20.0 14400 < th dose independent rect. 7 23
243 307.58 temperature 20.0 14400 > th dose independent rect. 7 23
249 307.64 temperature 20.0 14400 > th dose independent rect. 12 21
251 307.65 temperature 20.0 14400 > th dose independent rect. 3 18
252 307.65 temperature 20.0 14400 > th dose independent rect. 20 23
253 307.66 temperature 20.0 14400 < th dose independent rect. 12 21
263 307.69 temperature 20.0 14400 > th dose independent rect. 18 22
267 307.70 temperature 20.0 14400 < th dose independent rect. 18 22
269 307.71 temperature 20.0 43200 < th dose independent rect. 13 9
285 307.74 temperature 20.0 14400 > th dose independent rect. 3 23
299 307.77 temperature 20.0 14400 < th dose independent rect. 3 22
312 307.80 temperature 20.0 14400 > th dose independent rect. 20 20
317 307.81 temperature 20.0 14400 > th dose independent no NA NA
318 307.81 temperature 20.0 14400 < th dose independent rect. 17 17
337 307.82 wind 7.0 43200 > th dose dependent rect. 11 2
365 307.86 temperature 20.0 14400 < th dose independent rect. 3 18
392 307.89 temperature 20.0 14400 < th dose independent no NA NA
423 307.93 humidity 90.0 43200 < th dose independent rect. 10 1
451 308.04 temperature 20.0 14400 > th dose independent rect. 4 5
461 308.09 humidity 70.0 1440 > th dose independent sin 4 NA
503 308.22 radiation 20.0 1440 > th dose independent rect. 11 23
506 308.23 temperature 25.0 14400 < th dose dependent rect. 4 12
563 308.39 wind 9.0 43200 < th dose independent rect. 12 1
567 308.40 temperature 20.0 14400 > th dose independent sin 8 NA
587 308.47 temperature 20.0 14400 > th dose independent rect. 23 17
594 308.50 temperature 20.0 43200 < th dose independent rect. 20 1
625 308.60 temperature 20.0 43200 > th dose independent rect. 18 1
640 308.68 wind 7.0 43200 > th dose independent rect. 11 2
647 308.70 temperature 20.0 14400 < th dose independent sin 10 NA
661 308.73 radiation 1.0 43200 < th dose dependent rect. 6 9
668 308.78 wind 3.0 43200 > th dose independent rect. 2 3
689 308.87 temperature 20.0 14400 < th dose independent rect. 24 1
702 308.91 temperature 25.0 14400 < th dose dependent sin 3 NA
786 309.28 radiation 1.0 1440 > th dose dependent rect. 6 9
809 309.37 temperature 20.0 14400 < th dose independent rect. 24 16
813 309.38 wind 9.0 43200 > th dose dependent rect. 14 4
834 309.46 radiation 1.0 1440 > th dose dependent rect. 12 22
856 309.59 temperature 20.0 43200 > th dose independent rect. 21 1
862 309.61 radiation 20.0 1440 < th dose dependent rect. 11 22
869 309.64 temperature 20.0 43200 > th dose independent sin 21 NA
936 309.80 precipitation 0.1 43200 > th dose independent rect. 9 1
938 309.80 precipitation 0.1 43200 > th dose dependent rect. 9 1
948 309.83 temperature 20.0 43200 < th dose independent sin 20 NA
965 309.87 temperature 20.0 14400 < th dose independent rect. 4 5
973 309.88 temperature 10.0 14400 > th dose dependent rect. 11 2
984 309.91 radiation 1.0 14400 < th dose dependent rect. 19 10