Os08g0499000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0499000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.99 | 0.29 | 11.4 | -0.333 | 0.606 | 0.98 | -0.102 | -3.66 | 0.195 | 4.28 | 24.46 | 4342 | -- | -- |
| 39.38 | 0.292 | 11.3 | 0.285 | 0.599 | 0.984 | 0.0962 | -- | 0.229 | 4.1 | 15.39 | 5748 | -- | -- |
| 37.99 | 0.287 | 11.4 | -0.287 | 0.603 | 0.943 | -- | -3.37 | 0.192 | 4.27 | 24.1 | 4336 | -- | -- |
| 38.99 | 0.291 | 11.3 | 0.323 | 0.589 | 0.978 | -- | -- | 0.24 | 4.13 | 12.12 | 5764 | -- | -- |
| 56.74 | 0.351 | 11.4 | -0.26 | -- | 0.97 | -- | -3.09 | 0.172 | -- | 23.25 | 4159 | -- | -- |
| 55.32 | 0.349 | 11.3 | 0.812 | 0.638 | -- | -0.104 | -- | 0.453 | 4.07 | -- | -- | -- | -- |
| 55.35 | 0.348 | 11.3 | 0.813 | 0.638 | -- | -- | -- | 0.454 | 4.06 | -- | -- | -- | -- |
| 58.09 | 0.355 | 11.4 | 0.303 | -- | 1.06 | -- | -- | 0.198 | -- | 12 | 6973 | -- | -- |
| 40.98 | 0.298 | 11.4 | -- | 0.595 | 1.15 | -- | -- | 0.126 | 4.19 | 11.28 | 7104 | -- | -- |
| 77.48 | 0.411 | 11.3 | 0.839 | -- | -- | -- | -- | 0.471 | -- | -- | -- | -- | -- |
| 72.77 | 0.399 | 11.3 | -- | 0.653 | -- | -- | -- | 0.364 | 4.05 | -- | -- | -- | -- |
| 59.82 | 0.36 | 11.4 | -- | -- | 1.23 | -- | -- | 0.129 | -- | 7.232 | 6982 | -- | -- |
| 96.04 | 0.457 | 11.3 | -- | -- | -- | -- | -- | 0.378 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.27 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 13 |
| 5 | 37.42 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 12 |
| 8 | 37.50 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 12 |
| 22 | 37.66 | temperature | 20 | 720 | > th | dose dependent | sin | 11 | NA |
| 26 | 37.71 | temperature | 25 | 4320 | > th | dose dependent | sin | 5 | NA |
| 28 | 37.71 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 14 |
| 30 | 37.73 | temperature | 25 | 4320 | > th | dose independent | sin | 5 | NA |
| 49 | 37.78 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 60 | 37.81 | temperature | 25 | 4320 | < th | dose independent | sin | 5 | NA |
| 78 | 37.84 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 10 |
| 82 | 37.85 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 8 |
| 95 | 37.88 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 100 | 37.88 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 126 | 37.95 | humidity | 60 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 165 | 38.01 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 201 | 38.05 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 228 | 38.07 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 255 | 38.10 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 258 | 38.10 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 22 |
| 270 | 38.11 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 272 | 38.11 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 23 |
| 277 | 38.12 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 19 |
| 289 | 38.12 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 23 |
| 350 | 38.18 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 363 | 38.20 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 19 |
| 367 | 38.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 3 |
| 375 | 38.21 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 21 |
| 383 | 38.22 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 22 |
| 397 | 38.23 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 22 |
| 400 | 38.24 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 423 | 38.25 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 455 | 38.27 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 5 |
| 482 | 38.30 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 510 | 38.32 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 511 | 38.32 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 523 | 38.32 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 544 | 38.33 | radiation | 1 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 598 | 38.37 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 606 | 38.37 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 23 |
| 634 | 38.38 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 651 | 38.39 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 681 | 38.41 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 701 | 38.42 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 23 |
| 713 | 38.43 | humidity | 60 | 43200 | < th | dose independent | rect. | 2 | 10 |
| 714 | 38.43 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 730 | 38.44 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 746 | 38.45 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 762 | 38.46 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 786 | 38.47 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 796 | 38.48 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 832 | 38.50 | humidity | 60 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 859 | 38.52 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 860 | 38.52 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 871 | 38.52 | temperature | 20 | 4320 | > th | dose dependent | rect. | 15 | 18 |
| 874 | 38.53 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 896 | 38.54 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 940 | 38.57 | humidity | 60 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 947 | 38.57 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 1 |