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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0497300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cellular retinaldehyde binding/alpha-tocopherol transport family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.13 (0.0471) R2 : 0.767
β1 : -3.31 (0.173) R2dD : 0.195 R2D : 0.184
β2 : 3.57 (0.123) R2dC : 0.478 R2C : 0.268
β3 : -3.06 (0.139) R2dE : 0.274 R2E : 0.0637
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.74 (0.101) R2dN8 : 0.0365 R2N8 : 0.0137
σ : 0.881
deviance : 357.41
__
_____
C
peak time of C : 15
E
wheather : temperature
threshold : 11.66
memory length : 184
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.55
open length of G : 6.94

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
352.46 0.882 6.13 -3.35 3.74 -3.18 -0.231 -1.67 -0.762 14.8 7.998 234 4.3 7.07
357.14 0.88 6.1 -3.31 3.7 -3.24 -0.376 -- -0.735 14.8 10.01 202 4.33 7.17
350.86 0.872 6.13 -3.37 3.64 -2.96 -- -1.77 -0.765 14.9 9.148 185 4.57 7.05
357.41 0.881 6.13 -3.31 3.57 -3.06 -- -- -0.74 15 11.66 184 4.55 6.94
666 1.2 6.16 -3.62 -- -2.2 -- -0.245 -0.844 -- -11.91 8 0.652 11.3
478.94 1.03 6.21 -3.48 3.63 -- -0.352 -- -0.856 17.4 -- -- -- --
479.24 1.03 6.21 -3.48 3.63 -- -- -- -0.857 17.4 -- -- -- --
635.74 1.17 6.19 -3.61 -- -2.73 -- -- -0.778 -- -17.38 24 0.797 11
635.66 1.17 6.05 -- 3.7 -3.28 -- -- -0.331 15 15.61 176 4.6 7.06
1166.57 1.6 6.16 -3.61 -- -- -- -- -0.947 -- -- -- -- --
798.95 1.32 6.12 -- 3.69 -- -- -- -0.469 17.4 -- -- -- --
928.99 1.42 6.04 -- -- -3.13 -- -- -0.231 -- 6.103 58 0.532 10.9
1509.43 1.81 6.07 -- -- -- -- -- -0.547 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 356.01 temperature 10.0 270 > th dose dependent rect. 4 7
2 357.46 temperature 20.0 270 > th dose independent rect. 5 6
11 364.58 radiation 1.0 270 > th dose independent rect. 10 7
14 366.08 temperature 15.0 10 > th dose dependent rect. 6 6
17 366.96 temperature 10.0 90 > th dose dependent rect. 12 17
38 369.57 precipitation 0.1 270 < th dose independent rect. 11 18
39 369.57 precipitation 0.1 270 < th dose dependent rect. 11 18
64 373.07 humidity 50.0 270 > th dose independent rect. 16 18
66 373.34 temperature 15.0 270 > th dose independent rect. 6 15
68 373.71 atmosphere 995.0 270 > th dose independent rect. 17 17
70 374.04 wind 7.0 270 < th dose independent rect. 5 6
79 374.90 wind 9.0 270 < th dose independent rect. 11 18
81 374.92 precipitation 0.1 270 < th dose independent rect. 21 9
82 374.92 precipitation 0.1 270 < th dose dependent rect. 21 9
84 375.05 atmosphere 995.0 270 > th dose independent rect. 5 6
85 375.05 atmosphere 1015.0 270 < th dose independent rect. 5 6
86 375.05 temperature 10.0 270 > th dose independent rect. 11 18
87 375.08 radiation 20.0 270 < th dose dependent rect. 21 10
88 375.13 precipitation 0.1 270 < th dose independent rect. 5 6
89 375.13 precipitation 0.1 270 < th dose dependent rect. 5 6
93 375.55 wind 9.0 270 < th dose dependent rect. 5 6
96 375.89 humidity 50.0 270 > th dose independent rect. 5 6
98 375.97 precipitation 0.1 270 < th dose independent rect. 10 7
100 375.97 precipitation 0.1 270 < th dose dependent rect. 10 7
104 376.20 temperature 10.0 270 > th dose independent rect. 10 7
105 376.20 atmosphere 1015.0 270 < th dose independent rect. 10 7
106 376.20 temperature 10.0 270 > th dose independent rect. 17 17
117 377.22 wind 9.0 270 < th dose independent rect. 21 9
118 377.35 temperature 10.0 270 > th dose independent rect. 21 9
119 377.35 temperature 30.0 270 < th dose independent rect. 21 9
120 377.35 humidity 50.0 270 > th dose independent rect. 21 9
123 377.35 atmosphere 995.0 270 > th dose independent rect. 21 9
124 377.35 radiation 20.0 270 < th dose independent rect. 21 9
131 377.42 wind 1.0 270 > th dose independent rect. 10 7
142 377.47 wind 9.0 270 < th dose independent rect. 17 17
147 377.66 atmosphere 1015.0 270 < th dose independent rect. 11 18
148 377.66 temperature 10.0 270 > th dose dependent rect. 11 5
154 378.18 wind 9.0 270 < th dose independent rect. 10 7
157 378.23 wind 1.0 270 > th dose independent rect. 11 17
173 379.00 radiation 1.0 270 > th dose independent rect. 4 7
190 379.11 atmosphere 995.0 270 > th dose independent rect. 16 19
193 379.31 wind 9.0 270 < th dose independent rect. 6 15
213 380.34 temperature 10.0 90 > th dose dependent rect. 12 7
214 380.37 temperature 20.0 270 > th dose independent rect. 11 5
233 380.86 radiation 20.0 270 < th dose independent rect. 15 8
236 381.01 atmosphere 1015.0 270 < th dose independent rect. 21 9
237 381.02 temperature 10.0 270 > th dose dependent rect. 10 7
238 381.12 temperature 30.0 270 < th dose independent rect. 16 18
239 381.16 radiation 40.0 270 < th dose dependent rect. 14 9
249 381.70 precipitation 0.1 270 < th dose independent rect. 11 5
250 381.70 precipitation 0.1 270 < th dose dependent rect. 11 5
252 381.77 wind 1.0 270 > th dose independent rect. 11 5
254 381.78 temperature 10.0 270 > th dose independent rect. 11 5
255 381.78 atmosphere 1015.0 270 < th dose independent rect. 11 5
256 381.78 temperature 10.0 270 > th dose independent rect. 16 19
283 382.63 precipitation 0.1 270 < th dose independent rect. 10 21
284 382.63 precipitation 0.1 270 < th dose dependent rect. 10 21
310 383.10 wind 9.0 270 < th dose independent rect. 16 19
312 383.18 precipitation 0.1 270 < th dose independent rect. 17 17
313 383.18 precipitation 0.1 270 < th dose dependent rect. 17 17
314 383.27 atmosphere 995.0 270 > th dose independent rect. 6 15
322 383.54 wind 9.0 270 < th dose independent rect. 11 5
324 383.60 radiation 1.0 90 < th dose independent sin 17 NA
334 383.83 radiation 1.0 90 < th dose dependent sin 18 NA
350 383.99 radiation 1.0 90 > th dose independent sin 18 NA
383 384.67 humidity 90.0 90 < th dose independent rect. 12 7
406 384.99 wind 1.0 90 > th dose dependent rect. 12 7
411 385.15 precipitation 0.1 90 < th dose independent rect. 12 7
416 385.15 precipitation 0.1 90 < th dose dependent rect. 12 7
417 385.18 temperature 15.0 90 > th dose independent rect. 19 17
430 385.39 atmosphere 1015.0 270 < th dose independent rect. 6 15
465 386.01 wind 9.0 270 < th dose dependent rect. 7 3
472 386.16 temperature 20.0 10 > th dose independent rect. 6 7
525 386.94 atmosphere 995.0 270 > th dose independent rect. 10 7
530 387.02 wind 1.0 90 > th dose independent rect. 12 7
534 387.14 atmosphere 995.0 270 > th dose independent rect. 11 5
536 387.19 radiation 1.0 270 < th dose dependent rect. 21 16
562 387.49 wind 1.0 270 > th dose independent rect. 4 7
575 387.63 atmosphere 995.0 90 > th dose independent rect. 19 17
580 387.68 precipitation 0.1 270 < th dose independent rect. 6 15
582 387.68 precipitation 0.1 270 < th dose dependent rect. 6 15
583 387.69 wind 9.0 90 < th dose independent rect. 19 17
584 387.69 atmosphere 1015.0 10 < th dose independent rect. 13 17
585 387.71 wind 9.0 90 < th dose independent rect. 12 7
591 387.85 temperature 10.0 90 > th dose dependent rect. 19 17
592 387.86 humidity 50.0 270 > th dose independent rect. 11 4
629 388.22 precipitation 0.1 270 < th dose independent rect. 16 19
630 388.22 precipitation 0.1 270 < th dose dependent rect. 16 19
635 388.39 humidity 90.0 90 < th dose independent rect. 6 6
649 388.50 radiation 1.0 270 < th dose independent rect. 21 16
662 388.71 precipitation 0.1 10 < th dose independent rect. 6 7
663 388.71 precipitation 0.1 10 < th dose dependent rect. 6 7
664 388.72 wind 9.0 10 < th dose independent rect. 6 7
667 388.75 temperature 10.0 10 > th dose independent rect. 6 7
669 388.75 atmosphere 995.0 10 > th dose independent rect. 6 7
670 388.75 atmosphere 1015.0 10 < th dose independent rect. 6 7
671 388.75 temperature 10.0 10 > th dose independent rect. 13 17
679 388.84 wind 9.0 10 < th dose independent rect. 13 17
885 390.71 radiation 1.0 10 > th dose independent rect. 6 7
929 391.01 wind 1.0 270 > th dose dependent rect. 12 4
938 391.07 humidity 50.0 90 > th dose independent rect. 19 16
941 391.17 atmosphere 1015.0 270 < th dose independent rect. 23 17
950 391.33 wind 1.0 10 > th dose independent rect. 6 7
954 391.36 temperature 10.0 1440 > th dose independent rect. 7 7
957 391.36 atmosphere 995.0 1440 > th dose independent rect. 7 7
958 391.36 temperature 10.0 1440 > th dose independent rect. 14 17
961 391.37 radiation 1.0 270 > th dose independent sin 21 NA
995 391.71 radiation 1.0 270 < th dose dependent sin 8 NA