Os08g0496400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0496400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 433.34 | 0.978 | 3.85 | -0.71 | 0.388 | 1.94 | 0.56 | -3.47 | -0.813 | 0.73 | 23.7 | 259 | -- | -- |
| 438.61 | 0.975 | 3.79 | -0.177 | 0.381 | 1.68 | 0.858 | -- | -0.666 | 0.791 | 23.64 | 246 | -- | -- |
| 434.5 | 0.971 | 3.87 | -0.758 | 0.385 | 1.92 | -- | -3.56 | -0.841 | 0.668 | 23.4 | 259 | -- | -- |
| 441.57 | 0.979 | 3.79 | -0.194 | 0.359 | 1.6 | -- | -- | -0.663 | 0.102 | 23.53 | 252 | -- | -- |
| 438.95 | 0.976 | 3.85 | -0.807 | -- | 1.8 | -- | -3.64 | -0.836 | -- | 23.32 | 389 | -- | -- |
| 485.34 | 1.03 | 3.76 | 0.121 | 0.686 | -- | 0.449 | -- | -0.457 | 18.9 | -- | -- | -- | -- |
| 485.81 | 1.03 | 3.76 | 0.113 | 0.69 | -- | -- | -- | -0.455 | 18.8 | -- | -- | -- | -- |
| 445.67 | 0.983 | 3.79 | -0.176 | -- | 1.51 | -- | -- | -0.651 | -- | 23.54 | 380 | -- | -- |
| 442.52 | 0.98 | 3.79 | -- | 0.347 | 1.54 | -- | -- | -0.636 | 23.8 | 23.6 | 252 | -- | -- |
| 510.67 | 1.06 | 3.74 | 0.098 | -- | -- | -- | -- | -0.468 | -- | -- | -- | -- | -- |
| 486.15 | 1.03 | 3.76 | -- | 0.688 | -- | -- | -- | -0.468 | 18.8 | -- | -- | -- | -- |
| 446.48 | 0.984 | 3.78 | -- | -- | 1.48 | -- | -- | -0.626 | -- | 23.61 | 369 | -- | -- |
| 510.93 | 1.06 | 3.75 | -- | -- | -- | -- | -- | -0.479 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 429.83 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 2 |
| 3 | 430.39 | temperature | 25 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 6 | 430.68 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 11 | 431.70 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 18 | 432.30 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 2 |
| 20 | 432.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 12 |
| 79 | 435.28 | temperature | 25 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 92 | 435.77 | temperature | 20 | 270 | > th | dose dependent | sin | 22 | NA |
| 113 | 436.55 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 115 | 436.56 | temperature | 25 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 116 | 436.58 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 129 | 436.72 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 195 | 437.60 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 283 | 439.39 | radiation | 30 | 270 | > th | dose dependent | rect. | 15 | 1 |
| 429 | 440.83 | temperature | 25 | 720 | > th | dose dependent | sin | 7 | NA |
| 452 | 441.12 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 487 | 441.45 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 489 | 441.47 | radiation | 1 | 720 | > th | dose independent | sin | 12 | NA |
| 497 | 441.54 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 502 | 441.62 | temperature | 25 | 720 | > th | dose independent | sin | 5 | NA |
| 522 | 441.74 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 22 |
| 525 | 441.79 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 16 |
| 556 | 442.04 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 12 |
| 571 | 442.14 | temperature | 25 | 270 | > th | dose dependent | rect. | 14 | 2 |
| 584 | 442.27 | radiation | 1 | 720 | > th | dose independent | rect. | 14 | 18 |
| 606 | 442.47 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 13 |
| 607 | 442.48 | wind | 3 | 30 | > th | dose independent | rect. | 12 | 7 |
| 621 | 442.57 | radiation | 10 | 720 | > th | dose independent | rect. | 17 | 14 |
| 630 | 442.62 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 669 | 442.95 | radiation | 1 | 720 | < th | dose dependent | sin | 12 | NA |
| 680 | 443.05 | temperature | 25 | 720 | < th | dose independent | sin | 4 | NA |
| 699 | 443.20 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 17 |
| 721 | 443.36 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 724 | 443.39 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 740 | 443.52 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 23 |
| 748 | 443.58 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 758 | 443.63 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 16 |
| 773 | 443.73 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 775 | 443.75 | temperature | 25 | 720 | > th | dose independent | rect. | 22 | 19 |
| 782 | 443.76 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 785 | 443.79 | temperature | 25 | 720 | > th | dose independent | rect. | 24 | 18 |
| 874 | 444.28 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 902 | 444.40 | radiation | 1 | 720 | < th | dose independent | sin | 12 | NA |
| 922 | 444.46 | humidity | 60 | 270 | < th | dose dependent | rect. | 14 | 2 |
| 936 | 444.52 | radiation | 1 | 720 | < th | dose independent | rect. | 22 | 23 |
| 983 | 444.75 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 13 |
| 985 | 444.76 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 23 |