Os08g0496200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycosyl transferase, family 8 protein.
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Os08g0496200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycosyl transferase, family 8 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 239.79 | 0.728 | 3.07 | 0.372 | 0.179 | 0.915 | -0.103 | 2.34 | 0.0134 | 20.4 | 19.9 | 3583 | -- | -- |
| 247.15 | 0.732 | 2.99 | 0.717 | 0.169 | 0.472 | -0.223 | -- | 0.107 | 20.2 | 20 | 3570 | -- | -- |
| 239.82 | 0.721 | 3.07 | 0.375 | 0.18 | 0.917 | -- | 2.35 | 0.0136 | 20.2 | 19.91 | 3583 | -- | -- |
| 247.24 | 0.732 | 2.98 | 0.728 | 0.17 | 0.477 | -- | -- | 0.101 | 20.1 | 20.09 | 3584 | -- | -- |
| 241.61 | 0.724 | 3.07 | 0.363 | -- | 0.901 | -- | 2.36 | 0.00288 | -- | 19.92 | 3583 | -- | -- |
| 251.09 | 0.743 | 3.01 | 0.44 | 0.152 | -- | -0.229 | -- | -0.0293 | 20.3 | -- | -- | -- | -- |
| 251.21 | 0.742 | 3.01 | 0.448 | 0.158 | -- | -- | -- | -0.0286 | 19.6 | -- | -- | -- | -- |
| 248.77 | 0.735 | 2.98 | 0.716 | -- | 0.464 | -- | -- | 0.0897 | -- | 19.9 | 3569 | -- | -- |
| 255.56 | 0.745 | 3.01 | -- | 0.163 | 0.154 | -- | -- | -0.0376 | 19.8 | 22 | 1905 | -- | -- |
| 252.55 | 0.743 | 3.01 | 0.446 | -- | -- | -- | -- | -0.031 | -- | -- | -- | -- | -- |
| 256.51 | 0.749 | 3.02 | -- | 0.155 | -- | -- | -- | -0.0786 | 19.8 | -- | -- | -- | -- |
| 256.86 | 0.746 | 3.02 | -- | -- | 0.173 | -- | -- | -0.0424 | -- | 21 | 1651 | -- | -- |
| 257.8 | 0.749 | 3.02 | -- | -- | -- | -- | -- | -0.0805 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 236.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 2 | 236.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 12 | 237.19 | radiation | 10 | 10 | > th | dose dependent | rect. | 17 | 14 |
| 114 | 239.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 17 |
| 131 | 239.56 | radiation | 10 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 146 | 239.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 17 |
| 147 | 239.64 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 18 | 2 |
| 149 | 239.64 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 18 | 2 |
| 165 | 239.72 | wind | 1 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 195 | 239.94 | temperature | 20 | 4320 | > th | dose independent | sin | 9 | NA |
| 204 | 239.98 | temperature | 20 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 217 | 240.02 | temperature | 20 | 4320 | < th | dose independent | sin | 9 | NA |
| 264 | 240.27 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 270 | 240.28 | wind | 5 | 4320 | > th | dose independent | rect. | 21 | 6 |
| 272 | 240.28 | wind | 1 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 297 | 240.35 | wind | 5 | 4320 | < th | dose independent | rect. | 21 | 5 |
| 305 | 240.37 | wind | 1 | 14400 | < th | dose dependent | rect. | 7 | 4 |
| 313 | 240.40 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 348 | 240.50 | wind | 5 | 4320 | > th | dose dependent | rect. | 21 | 6 |
| 383 | 240.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 408 | 240.59 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 9 |
| 434 | 240.65 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 6 |
| 435 | 240.65 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 16 |
| 459 | 240.70 | radiation | 10 | 10 | > th | dose independent | rect. | 17 | 14 |
| 465 | 240.71 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 5 |
| 498 | 240.75 | wind | 1 | 14400 | < th | dose dependent | rect. | 7 | 6 |
| 551 | 240.85 | wind | 5 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 576 | 240.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 627 | 240.96 | wind | 5 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 639 | 240.97 | wind | 5 | 270 | > th | dose dependent | rect. | 16 | 15 |
| 665 | 241.02 | temperature | 20 | 1440 | > th | dose independent | sin | 1 | NA |
| 683 | 241.05 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 709 | 241.07 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 710 | 241.08 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 735 | 241.10 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 737 | 241.10 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 774 | 241.12 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 15 |
| 783 | 241.13 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 13 |
| 817 | 241.15 | temperature | 20 | 4320 | < th | dose dependent | rect. | 4 | 13 |
| 819 | 241.16 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 836 | 241.17 | wind | 7 | 270 | > th | dose independent | rect. | 17 | 12 |
| 883 | 241.20 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 12 | 8 |
| 899 | 241.21 | radiation | 10 | 4320 | < th | dose dependent | rect. | 10 | 4 |
| 921 | 241.23 | temperature | 20 | 1440 | < th | dose independent | sin | 1 | NA |
| 943 | 241.25 | wind | 1 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 967 | 241.27 | wind | 1 | 14400 | < th | dose dependent | sin | 1 | NA |
| 971 | 241.28 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 10 |
| 988 | 241.29 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 18 |
| 989 | 241.30 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 990 | 241.30 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 18 |
| 996 | 241.31 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |