Os08g0494200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0494200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 212.12 | 0.684 | 6.28 | 0.726 | 1.89 | 1.88 | 0.447 | -0.447 | 0.349 | 21.6 | 14.9 | 218 | -- | -- |
| 212.27 | 0.679 | 6.27 | 0.795 | 1.89 | 1.87 | 0.464 | -- | 0.368 | 21.6 | 14.82 | 218 | -- | -- |
| 212.86 | 0.68 | 6.28 | 0.697 | 1.88 | 1.89 | -- | -0.516 | 0.344 | 21.6 | 14.9 | 224 | -- | -- |
| 213.06 | 0.68 | 6.27 | 0.779 | 1.87 | 1.88 | -- | -- | 0.369 | 21.6 | 14.8 | 232 | -- | -- |
| 353.05 | 0.875 | 6.24 | 0.566 | -- | 2.91 | -- | 0.48 | 0.252 | -- | -66.59 | 602 | -- | -- |
| 249.46 | 0.74 | 6.22 | 1.2 | 2.05 | -- | 0.635 | -- | 0.635 | 20.6 | -- | -- | -- | -- |
| 250.77 | 0.742 | 6.22 | 1.18 | 2.05 | -- | -- | -- | 0.635 | 20.6 | -- | -- | -- | -- |
| 352.49 | 0.874 | 6.26 | 0.49 | -- | 2.86 | -- | -- | 0.182 | -- | 15.35 | 589 | -- | -- |
| 227.52 | 0.703 | 6.3 | -- | 1.9 | 2.23 | -- | -- | 0.258 | 21.7 | 14.55 | 231 | -- | -- |
| 487.76 | 1.03 | 6.16 | 1.18 | -- | -- | -- | -- | 0.617 | -- | -- | -- | -- | -- |
| 287.61 | 0.793 | 6.25 | -- | 2.05 | -- | -- | -- | 0.503 | 20.6 | -- | -- | -- | -- |
| 358.13 | 0.881 | 6.28 | -- | -- | 3.09 | -- | -- | 0.106 | -- | 14.9 | 600 | -- | -- |
| 524.22 | 1.07 | 6.19 | -- | -- | -- | -- | -- | 0.486 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 209.23 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |
| 3 | 209.32 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 4 | 209.37 | temperature | 15 | 10 | > th | dose dependent | sin | 20 | NA |
| 8 | 209.86 | temperature | 10 | 90 | > th | dose dependent | sin | 22 | NA |
| 17 | 210.10 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 38 | 211.50 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 56 | 211.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 58 | 212.18 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 17 |
| 61 | 212.46 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 62 | 212.54 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 66 | 212.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 69 | 212.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 71 | 212.68 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 14 |
| 78 | 212.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 22 |
| 80 | 212.87 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 89 | 213.03 | temperature | 30 | 90 | < th | dose dependent | sin | 21 | NA |
| 95 | 213.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 110 | 213.42 | temperature | 30 | 10 | < th | dose dependent | sin | 20 | NA |
| 117 | 213.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 10 | 19 |
| 171 | 214.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 176 | 214.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 188 | 214.39 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 198 | 214.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 204 | 214.48 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 226 | 214.60 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 242 | 214.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 247 | 214.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 263 | 214.77 | temperature | 15 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 264 | 214.78 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 318 | 215.06 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 329 | 215.14 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 336 | 215.19 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 339 | 215.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 363 | 215.29 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 399 | 215.45 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 443 | 215.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 477 | 215.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 494 | 215.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 508 | 215.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 511 | 215.92 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 546 | 216.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 557 | 216.13 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 13 |
| 599 | 216.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 7 |
| 601 | 216.31 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 611 | 216.33 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 619 | 216.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 10 |
| 745 | 216.77 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 780 | 216.89 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 880 | 217.16 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 10 |
| 960 | 217.38 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 12 |
| 997 | 217.48 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |