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Os08g0492000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glutathione transporter.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.72 (0.0374) R2 : 0.442
β1 : -1.3 (0.135) R2dD : 0.13 R2D : -0.0496
β2 : 3.23 (0.255) R2dC : 1.67 R2C : -1.16
β3 : -2.46 (0.224) R2dE : 1.25 R2E : -1.61
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.1 (0.0795) R2dN8 : 0.325 R2N8 : 0.12
σ : 0.689
deviance : 218.6
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C
peak time of C : 0.392
E
wheather : radiation
threshold : 3.703
memory length : 252
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15
open length of G : 11.7

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
216.94 0.692 8.71 -1.22 3.15 -2.36 2.6 -2.41 -1.07 0.484 3.68 248 15.1 11.9
232.02 0.709 8.8 -1.16 3 -2.25 1.17 -- -1.04 0.0687 4.606 236 15.4 11.4
219.66 0.69 8.73 -1.36 3.23 -2.42 -- -0.312 -1.09 0.531 3.745 246 15.2 11.9
218.6 0.689 8.72 -1.3 3.23 -2.46 -- -- -1.1 0.392 3.703 252 15 11.7
284.97 0.786 8.72 -1 -- -1.23 -- -0.531 -1.28 -- 10.98 2787 14.6 11.2
268.74 0.769 8.64 -1.32 0.632 -- 0.0769 -- -0.98 1.64 -- -- -- --
268.77 0.768 8.64 -1.32 0.632 -- -- -- -0.981 1.64 -- -- -- --
276.87 0.775 8.67 -1.03 -- -1.13 -- -- -1.09 -- 3.679 4238 14.6 11.3
268.01 0.762 8.69 -- 3.23 -2.46 -- -- -1.01 0.329 3.7 249 15 11.7
293.13 0.8 8.64 -1.3 -- -- -- -- -0.967 -- -- -- -- --
314.79 0.83 8.61 -- 0.608 -- -- -- -0.834 1.58 -- -- -- --
290.47 0.794 8.64 -- -- -1.26 -- -- -1.11 -- 3.91 7120 15.3 11.8
337.43 0.857 8.6 -- -- -- -- -- -0.823 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 221.31 temperature 10.0 270 > th dose dependent rect. 11 21
2 222.10 temperature 20.0 10 > th dose dependent rect. 14 19
7 222.59 radiation 10.0 270 < th dose dependent rect. 15 12
23 223.75 radiation 30.0 270 < th dose dependent rect. 15 11
48 225.01 radiation 1.0 270 < th dose independent rect. 15 12
75 225.95 radiation 20.0 270 < th dose independent rect. 15 11
79 226.12 temperature 10.0 270 > th dose dependent rect. 2 17
81 226.20 temperature 10.0 270 > th dose dependent rect. 11 11
83 226.21 temperature 30.0 270 < th dose independent rect. 16 10
105 226.99 temperature 25.0 90 > th dose independent rect. 13 8
111 227.21 radiation 10.0 1440 < th dose dependent rect. 20 9
129 227.78 radiation 1.0 90 < th dose dependent sin 14 NA
142 228.14 humidity 70.0 270 > th dose independent rect. 16 10
143 228.20 radiation 1.0 90 < th dose independent sin 14 NA
153 228.36 radiation 20.0 90 < th dose independent rect. 4 15
164 228.65 radiation 1.0 90 > th dose independent sin 14 NA
171 228.86 temperature 20.0 270 > th dose independent rect. 2 5
176 228.92 radiation 1.0 90 < th dose dependent rect. 13 15
199 229.19 temperature 25.0 30 > th dose independent rect. 13 20
206 229.30 atmosphere 995.0 43200 < th dose dependent rect. 15 1
208 229.31 temperature 20.0 270 > th dose independent rect. 3 3
224 229.59 humidity 80.0 270 > th dose dependent rect. 2 5
234 229.76 radiation 1.0 270 > th dose independent rect. 11 19
250 230.03 atmosphere 995.0 43200 < th dose independent rect. 14 2
253 230.05 humidity 80.0 270 > th dose dependent rect. 3 3
260 230.25 atmosphere 995.0 43200 > th dose independent rect. 15 1
286 230.80 radiation 1.0 270 > th dose independent rect. 10 21
307 231.08 radiation 40.0 14400 < th dose dependent rect. 20 9
308 231.10 radiation 40.0 90 < th dose independent rect. 4 15
309 231.10 radiation 1.0 90 > th dose independent rect. 13 18
326 231.29 humidity 80.0 90 < th dose independent rect. 1 12
330 231.33 temperature 20.0 10 > th dose dependent rect. 15 7
368 231.76 temperature 20.0 270 > th dose independent rect. 2 16
372 231.80 humidity 90.0 270 < th dose independent rect. 3 9
381 231.88 humidity 80.0 270 > th dose independent rect. 2 5
390 231.97 atmosphere 995.0 43200 > th dose independent rect. 13 7
402 232.01 radiation 20.0 90 < th dose independent sin 4 NA
416 232.10 temperature 25.0 90 < th dose independent rect. 8 20
439 232.27 wind 9.0 43200 > th dose dependent rect. 18 13
443 232.31 radiation 30.0 270 < th dose dependent sin 8 NA
459 232.41 temperature 15.0 270 > th dose dependent rect. 3 3
466 232.45 humidity 50.0 270 > th dose dependent rect. 16 10
468 232.46 humidity 80.0 270 > th dose independent rect. 1 7
469 232.51 radiation 1.0 270 < th dose independent sin 17 NA
471 232.52 humidity 80.0 90 < th dose independent sin 5 NA
491 232.62 radiation 40.0 90 < th dose dependent rect. 4 15
493 232.64 humidity 50.0 270 > th dose independent rect. 6 21
495 232.68 humidity 80.0 270 > th dose independent rect. 3 3
506 232.73 temperature 30.0 30 < th dose dependent rect. 9 20
549 233.01 radiation 30.0 10 < th dose independent rect. 12 21
551 233.02 humidity 70.0 90 > th dose dependent sin 5 NA
561 233.12 radiation 20.0 270 < th dose dependent rect. 2 11
568 233.18 radiation 1.0 270 < th dose independent rect. 3 5
589 233.35 radiation 30.0 10 < th dose independent rect. 14 19
595 233.38 humidity 70.0 270 > th dose dependent rect. 23 9
616 233.51 radiation 1.0 270 > th dose independent rect. 11 8
634 233.54 radiation 10.0 1440 < th dose independent rect. 20 9
637 233.54 radiation 10.0 270 < th dose dependent rect. 2 7
639 233.55 radiation 1.0 270 > th dose dependent rect. 7 4
641 233.56 temperature 30.0 270 < th dose independent rect. 6 20
672 233.73 temperature 25.0 30 > th dose dependent sin 13 NA
694 233.79 precipitation 0.1 90 < th dose independent rect. 13 19
695 233.79 precipitation 0.1 270 < th dose independent rect. 10 23
697 233.79 precipitation 0.1 90 < th dose dependent rect. 13 19
698 233.79 precipitation 0.1 270 < th dose dependent rect. 10 23
705 233.82 temperature 15.0 270 > th dose dependent rect. 2 5
721 233.87 radiation 1.0 270 < th dose independent rect. 3 9
728 233.88 temperature 30.0 270 < th dose dependent rect. 6 20
743 233.96 radiation 40.0 90 < th dose dependent sin 4 NA
794 234.20 humidity 90.0 270 < th dose independent rect. 7 4
803 234.23 humidity 90.0 43200 < th dose independent rect. 13 2
822 234.28 radiation 20.0 90 > th dose independent sin 5 NA
835 234.31 radiation 1.0 270 > th dose independent rect. 6 7
858 234.39 radiation 20.0 90 > th dose independent rect. 6 7
879 234.40 wind 9.0 43200 > th dose dependent rect. 18 6
941 234.57 wind 5.0 43200 > th dose independent rect. 13 2
965 234.63 humidity 80.0 90 > th dose independent sin 5 NA
969 234.64 radiation 1.0 90 > th dose dependent sin 5 NA
996 234.73 wind 5.0 43200 < th dose independent rect. 13 2