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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0491200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.34 (0.0384) R2 : 0.609
β1 : 0.853 (0.14) R2dD : 0.0329 R2D : 0.0343
β2 : 2.35 (0.0914) R2dC : 0.569 R2C : 0.569
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.139 (0.0818) R2dN8 : 0.00331 R2N8 : 0.00333
σ : 0.721
deviance : 236.94
__
_____
C
peak time of C : 23
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
219.4 0.696 5.33 0.795 2.23 0.742 -0.73 -0.666 -0.0383 22.1 80 135 -- --
220.81 0.692 5.32 0.797 2.25 0.735 -0.737 -- -0.0263 22.1 81 143 -- --
221.19 0.693 5.32 0.834 2.24 0.741 -- -0.838 -0.0318 22.1 80.53 145 -- --
223.96 0.697 5.32 0.785 2.26 0.695 -- -- -0.0409 22.2 81.44 147 -- --
441.52 0.984 5.27 0.896 -- 1.69 -- -1.46 -0.0642 -- 59 4 -- --
234.82 0.718 5.34 0.825 2.35 -- -0.709 -- -0.141 22.9 -- -- -- --
236.94 0.721 5.34 0.853 2.35 -- -- -- -0.139 23 -- -- -- --
447.43 0.985 5.27 0.845 -- 1.59 -- -- -0.0602 -- 61.64 2 -- --
239.91 0.721 5.34 -- 2.27 0.777 -- -- -0.11 22.1 82 159 -- --
580 1.13 5.28 0.905 -- -- -- -- -0.122 -- -- -- -- --
256.13 0.749 5.36 -- 2.36 -- -- -- -0.234 23 -- -- -- --
466.23 1.01 5.29 -- -- 1.6 -- -- -0.151 -- 62 2 -- --
601.61 1.14 5.31 -- -- -- -- -- -0.222 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 207.68 temperature 25.0 90 < th dose independent rect. 12 18
9 212.34 temperature 25.0 90 < th dose independent rect. 12 22
10 212.45 humidity 90.0 90 < th dose independent rect. 2 10
17 213.52 humidity 50.0 30 > th dose independent rect. 12 19
19 213.57 humidity 50.0 30 > th dose dependent rect. 12 6
23 213.69 humidity 90.0 30 < th dose independent rect. 7 5
24 213.74 wind 1.0 30 > th dose independent rect. 12 19
26 213.91 radiation 1.0 1440 > th dose independent rect. 12 1
27 214.00 wind 9.0 30 < th dose independent rect. 12 19
28 214.05 temperature 10.0 1440 > th dose independent rect. 8 5
31 214.05 atmosphere 995.0 1440 > th dose independent rect. 8 5
32 214.05 temperature 10.0 1440 > th dose independent rect. 13 19
35 214.09 wind 9.0 30 < th dose independent rect. 7 5
39 214.30 humidity 50.0 30 > th dose dependent rect. 12 19
40 214.31 radiation 1.0 30 > th dose independent rect. 7 5
41 214.37 temperature 20.0 10 > th dose independent rect. 7 5
43 214.43 precipitation 0.1 30 < th dose independent rect. 7 5
44 214.43 precipitation 0.1 30 < th dose dependent rect. 7 5
45 214.46 temperature 10.0 30 > th dose independent rect. 7 5
47 214.46 atmosphere 995.0 30 > th dose independent rect. 7 5
48 214.46 atmosphere 1015.0 30 < th dose independent rect. 7 5
49 214.46 temperature 10.0 30 > th dose independent rect. 12 19
51 214.48 humidity 90.0 90 < th dose independent rect. 18 18
52 214.48 atmosphere 1015.0 30 < th dose dependent rect. 12 19
53 214.50 wind 1.0 30 > th dose independent rect. 7 5
57 214.73 humidity 90.0 30 < th dose dependent rect. 3 9
59 214.79 humidity 60.0 14400 > th dose independent rect. 20 8
61 214.83 humidity 50.0 90 > th dose dependent rect. 23 19
64 214.86 radiation 1.0 1440 > th dose independent rect. 10 3
69 214.91 humidity 90.0 30 < th dose dependent rect. 20 16
70 215.00 humidity 50.0 30 > th dose dependent rect. 3 15
72 215.05 humidity 90.0 270 < th dose independent rect. 16 20
78 215.12 humidity 90.0 10 < th dose dependent rect. 7 5
80 215.14 precipitation 0.1 30 < th dose independent rect. 12 19
81 215.14 precipitation 0.1 30 < th dose dependent rect. 12 19
84 215.17 radiation 1.0 1440 < th dose independent rect. 11 1
86 215.17 radiation 1.0 1440 < th dose dependent rect. 11 1
104 215.40 temperature 10.0 30 > th dose dependent rect. 7 5
106 215.45 humidity 90.0 30 < th dose dependent rect. 24 12
109 215.47 humidity 80.0 30 < th dose independent rect. 11 1
116 215.59 humidity 60.0 14400 > th dose independent rect. 21 1
123 215.75 humidity 90.0 30 < th dose dependent rect. 22 14
126 215.80 atmosphere 1015.0 30 < th dose dependent rect. 7 5
132 215.89 humidity 60.0 30 > th dose independent rect. 12 6
133 215.91 temperature 25.0 270 > th dose independent rect. 16 10
135 215.93 humidity 50.0 30 > th dose independent rect. 7 5
144 216.03 temperature 25.0 270 > th dose independent rect. 16 16
146 216.05 atmosphere 995.0 14400 > th dose independent rect. 8 5
154 216.13 atmosphere 995.0 30 > th dose independent rect. 12 19
167 216.28 temperature 10.0 30 > th dose dependent rect. 20 16
190 216.68 temperature 10.0 30 > th dose dependent rect. 18 18
203 216.82 humidity 90.0 10 < th dose dependent rect. 11 1
204 216.83 humidity 60.0 14400 < th dose independent rect. 6 1
206 216.83 humidity 60.0 14400 < th dose independent rect. 20 1
208 216.83 radiation 20.0 14400 > th dose independent rect. 17 1
260 216.83 humidity 60.0 14400 < th dose dependent rect. 6 1
262 216.83 humidity 60.0 14400 < th dose dependent rect. 20 1
264 216.83 radiation 20.0 14400 > th dose dependent rect. 17 1
341 217.16 atmosphere 1010.0 10 < th dose dependent rect. 14 17
353 217.32 temperature 30.0 30 < th dose dependent rect. 12 19
372 217.48 temperature 25.0 270 > th dose independent sin 13 NA
374 217.49 radiation 1.0 270 > th dose independent rect. 16 20
388 217.59 temperature 20.0 30 > th dose independent rect. 11 1
407 217.70 humidity 80.0 10 < th dose independent rect. 9 3
413 217.77 atmosphere 1015.0 30 < th dose independent rect. 12 19
435 217.93 precipitation 0.1 30 < th dose independent rect. 18 18
437 217.93 precipitation 0.1 30 < th dose dependent rect. 18 18
465 218.10 wind 9.0 30 < th dose independent rect. 12 6
472 218.11 humidity 50.0 30 > th dose dependent rect. 12 23
484 218.17 wind 5.0 4320 > th dose dependent rect. 13 1
488 218.18 humidity 80.0 30 > th dose dependent rect. 3 23
489 218.19 humidity 80.0 10 > th dose independent rect. 3 15
491 218.19 humidity 50.0 10 > th dose dependent rect. 3 23
500 218.23 humidity 60.0 14400 > th dose independent rect. 20 4
508 218.27 humidity 50.0 270 > th dose dependent rect. 12 3
509 218.27 radiation 1.0 10 > th dose dependent rect. 7 5
513 218.32 temperature 10.0 1440 > th dose independent rect. 13 6
517 218.32 temperature 10.0 1440 > th dose independent rect. 19 18
521 218.32 atmosphere 995.0 1440 > th dose independent rect. 19 18
523 218.33 wind 9.0 30 < th dose independent rect. 18 18
530 218.36 radiation 1.0 30 < th dose independent rect. 5 12
551 218.47 radiation 10.0 270 < th dose independent rect. 7 1
558 218.51 atmosphere 995.0 30 > th dose independent rect. 18 18
561 218.52 atmosphere 1010.0 30 < th dose independent rect. 12 6
566 218.54 wind 7.0 4320 < th dose independent rect. 13 1
568 218.55 temperature 10.0 30 > th dose independent rect. 12 6
572 218.55 temperature 10.0 30 > th dose independent rect. 18 18
587 218.64 wind 7.0 4320 > th dose independent rect. 13 1
599 218.69 precipitation 0.1 30 < th dose independent rect. 12 6
600 218.69 precipitation 0.1 30 < th dose dependent rect. 12 6
621 218.73 wind 3.0 10 > th dose independent rect. 9 3
629 218.75 radiation 1.0 30 < th dose dependent rect. 5 11
638 218.78 humidity 50.0 10 > th dose dependent rect. 21 23
640 218.79 precipitation 0.1 30 < th dose independent rect. 20 16
644 218.79 precipitation 0.1 30 < th dose dependent rect. 20 16
646 218.79 radiation 1.0 10 > th dose dependent rect. 16 20
661 218.83 humidity 50.0 30 > th dose dependent rect. 12 21
673 218.91 temperature 20.0 10 > th dose independent rect. 7 16
678 218.94 humidity 50.0 30 > th dose independent rect. 12 8
711 219.05 humidity 60.0 14400 > th dose independent rect. 20 12
713 219.06 wind 1.0 30 > th dose independent rect. 12 6
715 219.07 wind 9.0 10 < th dose independent rect. 20 16
734 219.13 wind 9.0 10 < th dose independent rect. 12 8
739 219.16 humidity 90.0 30 < th dose dependent rect. 9 3
760 219.21 humidity 90.0 30 < th dose dependent rect. 16 20
770 219.26 humidity 90.0 90 < th dose independent rect. 24 23
777 219.31 humidity 60.0 14400 > th dose independent rect. 7 1
779 219.31 radiation 20.0 10 > th dose independent rect. 16 20
781 219.32 wind 7.0 10 < th dose independent rect. 11 1
806 219.40 humidity 80.0 10 > th dose independent rect. 23 20
810 219.42 temperature 25.0 90 > th dose independent rect. 18 18
817 219.44 radiation 20.0 10 > th dose independent rect. 7 5
820 219.44 temperature 10.0 1440 > th dose independent rect. 13 8
831 219.44 temperature 10.0 1440 > th dose independent rect. 21 16
834 219.44 atmosphere 995.0 1440 > th dose independent rect. 21 16
850 219.48 humidity 90.0 90 < th dose dependent sin 7 NA
855 219.49 atmosphere 1010.0 30 < th dose independent rect. 12 8
862 219.51 atmosphere 1015.0 30 < th dose independent rect. 18 18
871 219.53 temperature 10.0 30 > th dose independent rect. 12 8
874 219.53 temperature 10.0 30 > th dose independent rect. 20 16
875 219.53 atmosphere 995.0 30 > th dose independent rect. 20 16
880 219.53 radiation 1.0 270 < th dose independent rect. 21 21
881 219.53 atmosphere 995.0 30 > th dose dependent rect. 18 10
883 219.54 atmosphere 995.0 30 > th dose dependent rect. 12 6
885 219.54 humidity 50.0 10 > th dose dependent rect. 8 23
888 219.56 humidity 60.0 10 > th dose independent rect. 3 15
903 219.60 radiation 20.0 10 > th dose independent rect. 11 1
908 219.61 radiation 30.0 270 < th dose independent rect. 12 4
910 219.61 radiation 20.0 270 < th dose dependent rect. 7 1
915 219.64 precipitation 0.1 30 < th dose independent rect. 12 8
918 219.64 precipitation 0.1 30 < th dose dependent rect. 12 8
942 219.73 temperature 20.0 30 > th dose independent rect. 9 3
985 219.82 temperature 10.0 30 > th dose dependent rect. 11 1
993 219.86 wind 9.0 30 < th dose dependent rect. 12 6
996 219.87 wind 1.0 10 > th dose independent rect. 12 8